Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0147
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.2  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    21   3.7  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   3.7  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   3.7  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    21   3.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   8.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +2

Query: 197 GSLMFMFFVT-AVGNLETILFGKAFQLKLPEVVLSMGISLIAAGMVHR-ICFTTCLIFCV 370
           G+ M  +F+  A+  +   L     +L L +++   G+ +     + + I + TC++ C 
Sbjct: 55  GAFMVPYFIALALAGVPMFLM----ELSLGQMMTIGGLGVFKIAPIFKGIGYATCVLSCW 110

Query: 371 ITIYY 385
             IYY
Sbjct: 111 TNIYY 115


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +2

Query: 197 GSLMFMFFVT-AVGNLETILFGKAFQLKLPEVVLSMGISLIAAGMVHR-ICFTTCLIFCV 370
           G+ M  +F+  A+  +   L     +L L +++   G+ +     + + I + TC++ C 
Sbjct: 108 GAFMVPYFIALALAGVPMFLM----ELSLGQMMTIGGLGVFKIAPIFKGIGYATCVLSCW 163

Query: 371 ITIYY 385
             IYY
Sbjct: 164 TNIYY 168


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
 Frame = -2

Query: 327 MPAAINDIPI----DSTTSGNFNWNAL 259
           M AA  D P     DS    N+NWN L
Sbjct: 5   MMAATFDFPSLSFEDSDEGSNWNWNTL 31


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
 Frame = -2

Query: 327 MPAAINDIPI----DSTTSGNFNWNAL 259
           M AA  D P     DS    N+NWN L
Sbjct: 49  MMAATFDFPSLSFEDSDEGSNWNWNTL 75


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
 Frame = -2

Query: 327 MPAAINDIPI----DSTTSGNFNWNAL 259
           M AA  D P     DS    N+NWN L
Sbjct: 49  MMAATFDFPSLSFEDSDEGSNWNWNTL 75


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
 Frame = -2

Query: 327 MPAAINDIPI----DSTTSGNFNWNAL 259
           M AA  D P     DS    N+NWN L
Sbjct: 49  MMAATFDFPSLSFEDSDEGSNWNWNTL 75


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 69  ILPYFIWSNLCQLVFLL 19
           ILP  + S LC LVF L
Sbjct: 241 ILPTVLISFLCVLVFYL 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,937
Number of Sequences: 438
Number of extensions: 2421
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)