Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0147
(385 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77350.1 68414.m09008 expressed protein 68 2e-12
At1g77990.1 68414.m09088 sulfate transporter identical to sulfat... 28 1.9
At2g03240.1 68415.m00277 EXS family protein / ERD1/XPR1/SYG1 fam... 28 2.5
At4g03440.1 68417.m00471 ankyrin repeat family protein contains ... 27 3.3
At1g69450.1 68414.m07980 early-responsive to dehydration protein... 27 3.3
At4g24020.1 68417.m03452 RWP-RK domain-containing protein simila... 27 4.3
At5g54820.1 68418.m06828 F-box family protein contains Pfam:PF00... 27 5.7
At4g14820.1 68417.m02279 pentatricopeptide (PPR) repeat-containi... 27 5.7
At4g33440.1 68417.m04751 glycoside hydrolase family 28 protein /... 26 7.5
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 26 7.5
At1g52410.2 68414.m05915 caldesmon-related weak similarity to Ca... 26 7.5
At1g52410.1 68414.m05914 caldesmon-related weak similarity to Ca... 26 7.5
At3g14110.2 68416.m01783 tetratricopeptide repeat (TPR)-containi... 26 9.9
At3g14110.1 68416.m01784 tetratricopeptide repeat (TPR)-containi... 26 9.9
At2g44250.1 68415.m05506 expressed protein contains Pfam profi... 26 9.9
At2g32450.1 68415.m03964 calcium-binding EF hand family protein ... 26 9.9
At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containi... 26 9.9
>At1g77350.1 68414.m09008 expressed protein
Length = 122
Score = 68.1 bits (159), Expect = 2e-12
Identities = 38/105 (36%), Positives = 59/105 (56%)
Frame = +2
Query: 68 MAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYLGSLMFMFFVTAVGNLET 247
MA TS + S I+ +I S ++Y+ +L S + I GG+ SL+F+F +T +GN +
Sbjct: 1 MAGAVGTSMLGSLIVFTVILSLQEIYRGKLASSELFTILGGFTSSLLFLFSLTFIGNFQE 60
Query: 248 ILFGKAFQLKLPEVVLSMGISLIAAGMVHRICFTTCLIFCVITIY 382
+ V+L+ I+LIAAG VHR+C TTC +F +Y
Sbjct: 61 ---SSGIKSGWGAVILAEIIALIAAGTVHRVCITTCFLFSAGLLY 102
>At1g77990.1 68414.m09088 sulfate transporter identical to sulfate
transporter [Arabidopsis thaliana] GI:1498120
Length = 658
Score = 28.3 bits (60), Expect = 1.9
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -2
Query: 141 ICIPENIKRVNIDDSTKDVALFTAILPYFIWSNL 40
+CIP++I N+ + L+T+++P I+S +
Sbjct: 101 LCIPQSIGYANLAGLDPEYGLYTSVVPPLIYSTM 134
>At2g03240.1 68415.m00277 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 823
Score = 27.9 bits (59), Expect = 2.5
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -2
Query: 168 GDSISCGLYICIPENIKRVNIDDSTKDVALFTAILPYFIWSNLCQLVFL 22
G SI +CI N+ + +D TKD T +LP F+ + + ++ L
Sbjct: 511 GLSIGVFALLCILANLD-MEVDPETKDYQALTELLPLFLLTGMFVVLVL 558
>At4g03440.1 68417.m00471 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 751
Score = 27.5 bits (58), Expect = 3.3
Identities = 19/75 (25%), Positives = 33/75 (44%)
Frame = +2
Query: 26 NTSWHKLLQIKYGKMAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYLGSL 205
NT L+ +Y + + T +L+S+L ++ Q+ P+L + +L
Sbjct: 585 NTGMAILVDDRYLTTFIMNDTIAMLTSVLAIVALIWAQLGDPELAHRAFHLALPALFVAL 644
Query: 206 MFMFFVTAVGNLETI 250
+FM F G L TI
Sbjct: 645 LFMCFTFFYGVLATI 659
>At1g69450.1 68414.m07980 early-responsive to dehydration
protein-related / ERD protein-related low similarity to
ERD4 protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 646
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 65 KMAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTI 178
K A N F + ++ +FSG YK +IL P I
Sbjct: 372 KSACNKVIWFTIWNVFFATVFSGSAFYKLSVILDPKQI 409
>At4g24020.1 68417.m03452 RWP-RK domain-containing protein similar
to nodule inception protein [Lotus japonicus]
GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
Length = 959
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 200 SLMFMFFVTAVGNLETILFGKAFQLKLPE 286
SL +MF V + ++E L G+ F+ KLPE
Sbjct: 205 SLTYMFSVDSESDVELGLPGRVFRQKLPE 233
>At5g54820.1 68418.m06828 F-box family protein contains Pfam:PF00646
F-box domain
Length = 472
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 247 CLEVTNSSYKEHEH**TKIASEYYSHRRQYKLWF 146
CLE TN S+KE ++ I YS Y+ +F
Sbjct: 43 CLETTNLSFKESDYVNPDITDAEYSRIVAYRSFF 76
>At4g14820.1 68417.m02279 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 722
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 85 HVLRTVVNINPFDIFWNANV*TTAYTVSYDYNI 183
H+LRTV+N +N +V +++ +SY N+
Sbjct: 34 HILRTVINHKLNSFLFNLSVSSSSINLSYALNV 66
>At4g33440.1 68417.m04751 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15)
(Pectinase) {Agrobacterium tumefaciens}; contains
PF00295: Glycosyl hydrolases family 28
Length = 475
Score = 26.2 bits (55), Expect = 7.5
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -2
Query: 336 LWTMPAAINDIPIDSTTSGNFNWNALPNRIV 244
LW +P + D P+ T SG FN + PNRIV
Sbjct: 44 LW-IPTSQYDDPV--TCSGFFNHDPFPNRIV 71
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 26.2 bits (55), Expect = 7.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 265 IPIEITRSSTIDGNIIDCCWHGPQ 336
+P+EI R + G ++DC +H Q
Sbjct: 713 VPLEILRGHSSKGGVLDCKFHPRQ 736
>At1g52410.2 68414.m05915 caldesmon-related weak similarity to
Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
Length = 759
Score = 26.2 bits (55), Expect = 7.5
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -2
Query: 129 ENIKRVNIDDSTKDVALFTA 70
E++K++ +DDST+D FTA
Sbjct: 313 ESLKQLQVDDSTEDKEHFTA 332
>At1g52410.1 68414.m05914 caldesmon-related weak similarity to
Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
Length = 755
Score = 26.2 bits (55), Expect = 7.5
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -2
Query: 129 ENIKRVNIDDSTKDVALFTA 70
E++K++ +DDST+D FTA
Sbjct: 309 ESLKQLQVDDSTEDKEHFTA 328
>At3g14110.2 68416.m01783 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 232
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 326 CQQQSMIFPSIVLLLVISIGMLYQTELSRGYQQQLQR 216
C+ +S +F +LLLV IG L+R + +LQR
Sbjct: 35 CEPESSMFSMPILLLVALIGATVGGLLARQRKGELQR 71
>At3g14110.1 68416.m01784 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 316
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 326 CQQQSMIFPSIVLLLVISIGMLYQTELSRGYQQQLQR 216
C+ +S +F +LLLV IG L+R + +LQR
Sbjct: 119 CEPESSMFSMPILLLVALIGATVGGLLARQRKGELQR 155
>At2g44250.1 68415.m05506 expressed protein contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 409
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 298 DGNIIDCCWHGPQDLFHH 351
DG+IIDC W Q F H
Sbjct: 57 DGDIIDCVWIYHQPAFDH 74
>At2g32450.1 68415.m03964 calcium-binding EF hand family protein low
similarity to O-linked GlcNAc transferase [Homo sapiens]
GI:2266994; contains Pfam profiles PF00036: EF hand,
PF00515: TPR Domain
Length = 802
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 257 GKAFQLKLPEVVLSMGISLIAAGMVHRIC 343
G + LP++ +++GISL GMV C
Sbjct: 297 GNQWAYLLPQIYVNLGISLEGEGMVLSAC 325
>At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 836
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 166 SYDYNIRRLSWFINVHVLCNCCW*PRD 246
S+ +NIR LS+F + C C PRD
Sbjct: 41 SFSFNIRLLSYFTVRNGFCPDCSVPRD 67
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,569,308
Number of Sequences: 28952
Number of extensions: 162429
Number of successful extensions: 433
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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