Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0145
(614 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain tran... 29 0.031
AF231104-1|AAF64149.1| 142|Tribolium castaneum labial protein p... 29 0.031
AF231103-1|AAF64148.1| 142|Tribolium castaneum labial protein p... 29 0.031
AY074761-1|AAL71874.1| 314|Tribolium castaneum ultrabithorax pr... 27 0.095
EF592537-1|ABQ95983.1| 593|Tribolium castaneum beta-N-acetylglu... 23 1.5
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 23 2.0
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 23 2.0
DQ138189-1|ABA03053.1| 162|Tribolium castaneum bursicon protein. 23 2.7
DQ659248-1|ABG47446.1| 496|Tribolium castaneum chitinase 8 prot... 21 6.2
AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase ... 21 8.2
>AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain
transcription factor Labialprotein.
Length = 353
Score = 29.1 bits (62), Expect = 0.031
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 9/120 (7%)
Frame = +2
Query: 263 PASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMD--- 433
PA P S L + P P +R+ S N+SS + G T+ ++
Sbjct: 216 PAEFPTTSSSSALES-PNPASRSSCLGS--NTSSMLSLNCLNTGRTNFTNKQLTELEKEF 272
Query: 434 ----YWRHARSIQAQSRLTADFEQH--WRHARSIQAQPRLTASFEQHWPLQANLSTDNAN 595
Y AR I+ S L + Q W R ++ + R+ P+ A+LST N+N
Sbjct: 273 HFNKYLTRARRIEIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPPEPISASLSTSNSN 332
>AF231104-1|AAF64149.1| 142|Tribolium castaneum labial protein
protein.
Length = 142
Score = 29.1 bits (62), Expect = 0.031
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 9/120 (7%)
Frame = +2
Query: 263 PASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMD--- 433
PA P S L + P P +R+ S N+SS + G T+ ++
Sbjct: 5 PAEFPTTSSSSALES-PNPASRSSCLGS--NTSSMLSLNCLNTGRTNFTNKQLTELEKEF 61
Query: 434 ----YWRHARSIQAQSRLTADFEQH--WRHARSIQAQPRLTASFEQHWPLQANLSTDNAN 595
Y AR I+ S L + Q W R ++ + R+ P+ A+LST N+N
Sbjct: 62 HFNKYLTRARRIEIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPPEPISASLSTSNSN 121
>AF231103-1|AAF64148.1| 142|Tribolium castaneum labial protein
protein.
Length = 142
Score = 29.1 bits (62), Expect = 0.031
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 9/120 (7%)
Frame = +2
Query: 263 PASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMD--- 433
PA P S L + P P +R+ S N+SS + G T+ ++
Sbjct: 5 PAEFPTTSSSSALES-PNPASRSSCLGS--NTSSMLSLNCLNTGRTNFTNKQLTELEKEF 61
Query: 434 ----YWRHARSIQAQSRLTADFEQH--WRHARSIQAQPRLTASFEQHWPLQANLSTDNAN 595
Y AR I+ S L + Q W R ++ + R+ P+ A+LST N+N
Sbjct: 62 HFNKYLTRARRIEIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPPEPISASLSTSNSN 121
>AY074761-1|AAL71874.1| 314|Tribolium castaneum ultrabithorax
protein.
Length = 314
Score = 27.5 bits (58), Expect = 0.095
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +3
Query: 381 HQRLGSHISGVAALHTWTTGDTHAAFKLSLD-SPQTSSSTGDTHAAFKLSLDSPQASSST 557
H + GS ++G + + +F LSL SP SS H + DSP +S
Sbjct: 15 HHQSGS-VAGHHHEQSAAAAAAYRSFPLSLGMSPYASSQHHHHHLQARPPQDSPYDASVA 73
Query: 558 GPCKLISA 581
CKL S+
Sbjct: 74 AACKLYSS 81
>EF592537-1|ABQ95983.1| 593|Tribolium castaneum
beta-N-acetylglucosaminidase NAG2 protein.
Length = 593
Score = 23.4 bits (48), Expect = 1.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -3
Query: 138 HQFMEIYDKGKIFHRAGDIALVP 70
+ + + KG+IFH GD +P
Sbjct: 362 NDIVNMLPKGEIFHMGGDEVYIP 384
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 23.0 bits (47), Expect = 2.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 184 RIKNSGYHNPRILADKSTSLTVVPQQASIA 273
+I ++ +NP I A + SL V Q+ SIA
Sbjct: 1400 QIGSTSSNNPSISAFRKKSLAYVQQRMSIA 1429
Score = 21.0 bits (42), Expect = 8.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 247 VVPQQASIAASTGPSQPTHRASWSYG 324
V+P + A+S G P H +S+ G
Sbjct: 339 VLPGNYANASSVGSRNPIHTSSYMTG 364
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
protein.
Length = 1464
Score = 23.0 bits (47), Expect = 2.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 184 RIKNSGYHNPRILADKSTSLTVVPQQASIA 273
+I ++ +NP I A + SL V Q+ SIA
Sbjct: 1400 QIGSTSSNNPSISAFRKKSLAYVQQRMSIA 1429
Score = 21.0 bits (42), Expect = 8.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 247 VVPQQASIAASTGPSQPTHRASWSYG 324
V+P + A+S G P H +S+ G
Sbjct: 339 VLPGNYANASSVGSRNPIHTSSYMTG 364
>DQ138189-1|ABA03053.1| 162|Tribolium castaneum bursicon protein.
Length = 162
Score = 22.6 bits (46), Expect = 2.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -3
Query: 570 ACKGQCCSKLAVSRG*A*MLRACRQCCSKS 481
AC G+C S + VS + CC +S
Sbjct: 64 ACIGRCASYIQVSGSKIWQMERSCMCCQES 93
>DQ659248-1|ABG47446.1| 496|Tribolium castaneum chitinase 8
protein.
Length = 496
Score = 21.4 bits (43), Expect = 6.2
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +2
Query: 311 PGPTARNFTASSRRNSSSQPTTGSST 388
P P T S +S QPT S+T
Sbjct: 399 PEPQPTQTTESEPTQASEQPTESSTT 424
>AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase
protein.
Length = 677
Score = 21.0 bits (42), Expect = 8.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 247 VVPQQASIAASTGPSQPTHRASWSYG 324
V+P + A+S G P H +S+ G
Sbjct: 106 VLPGNYANASSVGSRNPIHTSSYMTG 131
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,087
Number of Sequences: 336
Number of extensions: 3025
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -