Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0145
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    32   0.076
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    29   0.71 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   0.93 
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    27   1.6  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   1.6  
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    27   2.2  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    27   2.8  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    27   2.8  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    26   3.8  
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    26   5.0  
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    26   5.0  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    25   6.6  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   6.6  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   6.6  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   8.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.7  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 31.9 bits (69), Expect = 0.076
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +2

Query: 182 SASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDH--RSRLTALPGPTARNFTASSRRN 355
           S S  P+T+  + S   +    SS S  +S         S  ++   PT+ + T SS  +
Sbjct: 236 STSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSS 295

Query: 356 SSSQPTTGSSTL 391
           SSS PT+ SST+
Sbjct: 296 SSSSPTSTSSTI 307



 Score = 29.5 bits (63), Expect = 0.40
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 432 TTGDTHAAFKLSLDS-PQTSSSTGDTHAAFKLSLDSPQASSSTGPCKLISARTT 590
           ++  T  +  LS  S P TSSS+  T ++   S  S  ASSS+    +IS+ ++
Sbjct: 225 SSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSS 278


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 26/97 (26%), Positives = 43/97 (44%)
 Frame = +2

Query: 182 SASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSS 361
           S+S T  TT P+ S        SS S  +S       S  ++    ++ + ++SS  +SS
Sbjct: 145 SSSSTTTTTSPSSS--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 196

Query: 362 SQPTTGSSTLGVTHLRRGSSAHMDYWRHARSIQAQSR 472
           S  ++ SS+  V      SS+H      + S  + SR
Sbjct: 197 SSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSR 233


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = +2

Query: 194 TPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPT 373
           T +T+    + I      SS S P +       +  T++P P     T+S+  NSS  PT
Sbjct: 167 TTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTS--TSSTDTNSSPLPT 224

Query: 374 TGSSTLGVTHLRRGSSAHM 430
           T +S    T +  G S+ +
Sbjct: 225 TSTSCTTSTSIPTGGSSSL 243


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = +2

Query: 308 LPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHARSIQAQSRLTADF 487
           LP P+A   T+S   N SS  T   S   + H    S +     RH R  + ++R     
Sbjct: 91  LPQPSALALTSSKAANRSSTNTEKDSR-SIAHSTSRSRSTSPANRHRRKEKERTRSNHRH 149

Query: 488 EQHWRH 505
             H RH
Sbjct: 150 GSHRRH 155


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 103  DLPFVVYLHKLVTCDVM*TRNHLIHLQR 186
            D  +V Y H  + CDVM +R HL+ + R
Sbjct: 1365 DGSYVNYRHLALLCDVMTSRGHLMAITR 1392


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 205 HNPRILADKSTSLTVVPQQASIAASTGPSQPTHRAS 312
           H P +  DK+     VP +A++  + G S+P   AS
Sbjct: 65  HLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISAS 100


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/43 (20%), Positives = 20/43 (46%)
 Frame = +3

Query: 252 PTASQHRSLNRTIAADSPRFLVLRHATSLPHHAATVHRSPRPD 380
           P     R+ N+ + +  P+   +  A +  HH   +++  +PD
Sbjct: 677 PNQGYDRARNQKLPSKDPQLFTIEEAFTTVHHLVRLYKVKKPD 719


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/73 (23%), Positives = 31/73 (42%)
 Frame = +3

Query: 336 LPHHAATVHRSPRPDHQRLGSHISGVAALHTWTTGDTHAAFKLSLDSPQTSSSTGDTHAA 515
           L  H   +HR+P+P  +R  +      +L   +   T+ A K  +  PQ  S     +  
Sbjct: 120 LLRHQQKIHRNPQPRRRRRSTTALPNPSLSNVSVSTTNLASKPVISLPQADSIDKFRYPK 179

Query: 516 FKLSLDSPQASSS 554
              +L +  A++S
Sbjct: 180 LHAALQAQLANNS 192


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = +3

Query: 165 PSDSSSAHQELRLPQSPHSRR*KHVIDSRPTASQHRSLNRTIAADSPRFLVLRHATSLPH 344
           P+ S      L  P+   S    H+ D  P  S  R+ +RT++  S  +L +RH      
Sbjct: 207 PTKSIYDQNGLTTPRPIGSDDLTHMYD--PYTSPLRTPSRTLSRSSSHYLWVRHGKLTRS 264

Query: 345 HAATVHRSPR 374
            +   H++PR
Sbjct: 265 VSLLQHKTPR 274


>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +1

Query: 160 RNHLIHLQRIKNSGYHNPRILADKSTSLTVVPQQASIAASTGPSQPT 300
           R   IH+ ++ ++ Y N R +   S+ ++ +PQ+ S A+ +   QPT
Sbjct: 111 RKRAIHMIKLWHNDYSNVRGMESMSSLVSRLPQRQSSASHS--EQPT 155


>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +3

Query: 174 SSSAHQELRLPQSPHSRR*KHVIDSRPTASQHRSLNRTIAADSPRFLVLRHATSL 338
           S   +    +  S  S + K  I+    A  H++ NRT   DSP  +V    T L
Sbjct: 295 SHQPYHYTNVKDSQGSHQTKVTIEENMEAPSHQAANRTTLTDSPLGIVEDETTIL 349


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 607 FFFLISVVRAEISLQGPVLLEACGESRLSLNAACVSPVLLEV 482
           FFFL  V  A IS Q  +LL++C    +    A ++ ++  V
Sbjct: 336 FFFLRFVNPAIISPQTSMLLDSCPSDNVRKTLATIAKIIQSV 377


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 251 SHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSS 385
           S  KPA+       + +T     T  N +  +  N+ S PTTG S
Sbjct: 227 SFGKPATTSAPGSNTTVTPSSSITGTNDSKPAASNTGSAPTTGFS 271


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 21/85 (24%), Positives = 37/85 (43%)
 Frame = +2

Query: 176 IFSASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRN 355
           + S+     T +P  S   +RH  S+ +KPA+    +  +    LP  +     + SR N
Sbjct: 96  VVSSKPNQTTAMPPPSNNPSRHVSSTSNKPAA-VSPNPAAHHAELPSGSVPPSASVSRAN 154

Query: 356 SSSQPTTGSSTLGVTHLRRGSSAHM 430
           S++  TT     GV      ++ H+
Sbjct: 155 STA--TTTPHKAGVVSNPAAANVHV 177


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 467 SRLTADFEQHWRHARSIQAQPRLTASFEQH 556
           S L + FE     AR     PR   SFEQH
Sbjct: 385 SSLKSFFEHAAEAARKCNLDPRALESFEQH 414


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 388 AWGHTSPAWQLCTHGLLATRTQHSSSVSTH 477
           ++ ++S  +    H +L T+++HSSS S+H
Sbjct: 306 SYDNSSETFVEAIHKILDTKSKHSSSKSSH 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,665
Number of Sequences: 5004
Number of extensions: 49663
Number of successful extensions: 249
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)