Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0145
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617 33 0.24
03_01_0168 + 1382531-1383931,1384028-1384150 31 0.73
07_01_0629 - 4695778-4696077,4696242-4696406,4696497-4696673,469... 30 1.3
05_06_0202 - 26339467-26339494,26339579-26339624,26339742-263397... 30 1.3
11_03_0047 - 9311913-9312659 30 1.7
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 29 2.2
02_03_0344 + 17967687-17968309,17968402-17968744,17970285-179704... 29 2.2
02_02_0186 + 7594197-7594281,7594409-7594513,7595062-7595238,759... 29 2.2
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 29 3.9
07_01_0827 - 6664723-6665346,6666636-6667559 28 5.1
02_05_0513 - 29682657-29682956 28 5.1
02_03_0345 + 17973509-17974131,17974207-17974537,17974624-179749... 28 5.1
09_02_0468 - 9608922-9610061 28 6.8
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 28 6.8
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235 28 6.8
02_03_0343 + 17961977-17962596,17962670-17963015,17965933-179662... 28 6.8
01_05_0461 + 22446797-22447050,22447171-22447288,22447895-224482... 28 6.8
07_01_1149 + 10789733-10791209,10791326-10791588,10791745-107919... 27 8.9
02_02_0543 + 11360514-11361350,11361434-11361559,11361648-113619... 27 8.9
>01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617
Length = 507
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 263 PASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSST 388
PA QP Q + ++ + PT+ + ++S R + SS+P +ST
Sbjct: 143 PAPQPVQPQQQLVSPVAAPTSSSSSSSDRSSGSSKPARATST 184
>03_01_0168 + 1382531-1383931,1384028-1384150
Length = 507
Score = 31.1 bits (67), Expect = 0.73
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 338 ASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHAR 451
A +RRN SS P+ ++ G+ H+ G +A + W+ R
Sbjct: 65 AGNRRNDSSPPSDDAAPTGLGHIVFGIAASSELWKSRR 102
>07_01_0629 -
4695778-4696077,4696242-4696406,4696497-4696673,
4697157-4697455,4697589-4697751,4697897-4698088,
4698211-4698385,4698527-4698741,4698948-4699385
Length = 707
Score = 30.3 bits (65), Expect = 1.3
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +2
Query: 197 PATTIPAFSQIKARH*Q--SSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQP 370
P +P S+I AR + S+ A D SRL LP + +SS+ ++ S P
Sbjct: 624 PVELLPRCSEIVARQLELVESYQLLAETFGTDSNSRLQILPVKITKK--SSSKGSAGSMP 681
Query: 371 TTGSSTLGVTHLRRGSS 421
GSS L V+ GSS
Sbjct: 682 KQGSSDLIVSDNGGGSS 698
>05_06_0202 -
26339467-26339494,26339579-26339624,26339742-26339785,
26340729-26340851,26341010-26341124,26341447-26342207,
26342305-26342711,26342798-26342900,26344642-26345144
Length = 709
Score = 30.3 bits (65), Expect = 1.3
Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
Frame = +3
Query: 252 PTASQHRSLNRTIAADSPRFLVLRHATSLPHHAATVHRSPRPDHQRLGSHISGVAALHTW 431
P+ H+ L + D RH +S H SP P + G + G A + +
Sbjct: 386 PSRPSHQELPVSQRGDGQPSTTTRHFSS---PIGMEHVSPTPQY---GPLLRGKAFVPSA 439
Query: 432 TTGDTHAAFKLS-LDSPQTSSSTGDTHAAFKLSLDSPQASSSTGPCKLISAR 584
G HA + +D P SST + + F ++ + +S+ P ++ R
Sbjct: 440 GHGKLHAEVPIKGMDHPSFHSSTSSSTSQFPIATNQVTGNSAKSPHPIVQQR 491
>11_03_0047 - 9311913-9312659
Length = 248
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +2
Query: 290 RSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHARSIQAQS 469
R ++ P P T+SS +S S PTTGS G+ H + A+M A + Q+
Sbjct: 44 RELASSSPEPCRGLITSSSSSSSPSSPTTGSFCDGIDH--KSLRANM-----AAPVAEQA 96
Query: 470 RLTAD 484
R+ AD
Sbjct: 97 RVLAD 101
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 299 LTALPGPTARNFTASSRRNSSSQPT 373
+ A+PGPT+RN NSSS P+
Sbjct: 510 IPAIPGPTSRNVPMEENSNSSSIPS 534
>02_03_0344 +
17967687-17968309,17968402-17968744,17970285-17970410,
17970458-17970642,17970721-17970973
Length = 509
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 413 GSSAHMDYWRHARSIQAQSRLTADFEQHWR--HARSIQAQPR 532
G++++ YWRH R + L+A QH+ H R +A R
Sbjct: 122 GTASYGPYWRHVRRVAVTEILSARRVQHFADVHVREARAMAR 163
>02_02_0186 +
7594197-7594281,7594409-7594513,7595062-7595238,
7595716-7595886,7596198-7596289,7596302-7596407,
7597516-7597601,7597861-7598501,7599065-7599107
Length = 501
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/93 (21%), Positives = 35/93 (37%)
Frame = +2
Query: 245 QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSA 424
+ + P +Q R L GP N TA + S STL H
Sbjct: 356 EDTEETPVAQKLSSTPMRPETLHGPNPVNETAPKAQKSVKSSKFRDSTLSSKHRSSKRQE 415
Query: 425 HMDYWRHARSIQAQSRLTADFEQHWRHARSIQA 523
+ +++ + + Q S++ D +H +S +A
Sbjct: 416 YAEFYGSSETPQVSSKVPKDRLRHRHREKSGEA 448
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 257 SKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTL 391
S SQPQQ H ++P PT +A ++S P S +
Sbjct: 393 SSGGSQPQQTHPITKPSVPAPTVSGVSAGVSNSASQWPKVTQSDI 437
>07_01_0827 - 6664723-6665346,6666636-6667559
Length = 515
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/97 (23%), Positives = 35/97 (36%)
Frame = +2
Query: 254 HSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMD 433
H P+S+ RL GP + + +S P L + + HM
Sbjct: 51 HFVPSSESVHGAMRRLAREHGPVMQLWFGEVPTVVASSPEAAQEVLRSKDMAF-ADRHMT 109
Query: 434 YWRHARSIQAQSRLTADFEQHWRHARSIQAQPRLTAS 544
A S + A + + WRH R + Q LTA+
Sbjct: 110 SATAAFSFGGRDVALAPYGERWRHLRRLLTQELLTAA 146
>02_05_0513 - 29682657-29682956
Length = 99
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -3
Query: 405 RCVTPSVDDPVVGCDELLRRDEAVKLRAVGPGSAVSRLRWS 283
RC T +DPV G + RRD +K RA+ P +LRWS
Sbjct: 44 RCGTRVAEDPVGGEACIGRRDGWIKGRALLPEKI--KLRWS 82
>02_03_0345 +
17973509-17974131,17974207-17974537,17974624-17974985,
17975314-17975572
Length = 524
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 413 GSSAHMDYWRHARSIQAQSRLTADFEQHWR--HARSIQAQPR 532
G++++ YWRH R I L+A QH+ + R ++A R
Sbjct: 123 GTASYGPYWRHIRRIAVTELLSAHRVQHFADVNVREVRALAR 164
>09_02_0468 - 9608922-9610061
Length = 379
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 291 AADSPRFLVLRHATSLPHHAATVHRSPRPDHQR 389
+ DSPR+ R S+P T+ RSPR +R
Sbjct: 77 SVDSPRWRGARRRPSVPDMELTLSRSPRAGEER 109
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 220 LADKSTSLTVVPQQASIA-ASTGPSQPTHRASW 315
LAD T P+ SI AST PSQ H A W
Sbjct: 1036 LADFVAEWTPAPETVSIPEASTDPSQLPHTAHW 1068
>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
Length = 1293
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 165 PSDSSSAHQELRLPQSPHSRR*KHVIDSRPTASQHRSLNRTIA 293
PSD + H+ P+ PH+RR V +R R+L+R A
Sbjct: 1215 PSDPEAGHEGAPCPRRPHARR---VAGAREIGRTARTLHRLAA 1254
>02_03_0343 +
17961977-17962596,17962670-17963015,17965933-17966291,
17966384-17966636
Length = 525
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 368 PTTGSSTLGVTHLRRGSSAHMDYWRHARSIQAQSRLTADFEQHW--RHARSIQAQPR 532
P+ G + G + + G++A+ YWRH R + L+A + + HAR +A R
Sbjct: 105 PSAGILSYGWSTM--GTAAYGPYWRHVRRVAVAEILSAHRVRQFAGAHAREARATAR 159
>01_05_0461 +
22446797-22447050,22447171-22447288,22447895-22448217,
22448908-22449056,22449324-22449463,22449606-22449757,
22449862-22450021,22450071-22450088
Length = 437
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 271 AASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINAWGHTSPAWQ 417
A+STG +P +W+ G++ L F AA+ ++ + + WQ
Sbjct: 26 ASSTGEERPDLPWAWALGSERRVLALALAFRAANALLVRTYFNPDEHWQ 74
>07_01_1149 + 10789733-10791209,10791326-10791588,10791745-10791954,
10792398-10792475,10792505-10792705,10792768-10792908,
10794749-10795714,10797824-10797919,10798450-10798638,
10798849-10798956
Length = 1242
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -2
Query: 328 ACRRTRKRGESAAMVLLRLRCWLAVGRLSM 239
+C + RKRG S+ ++L++R A GR+S+
Sbjct: 975 SCNKWRKRGISSVPLILKVRVRPAPGRVSV 1004
>02_02_0543 +
11360514-11361350,11361434-11361559,11361648-11361976,
11362078-11362861
Length = 691
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 380 SSTLGVTHLRRGSSA---HMDYWRHARSIQAQSRLTADFEQHWR 502
+S LG HL ++A H D A + A+ R+ AD ++H+R
Sbjct: 496 TSNLGAQHLADAAAADASHKDDATEAAAAAAKQRVLADVQRHFR 539
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,761,370
Number of Sequences: 37544
Number of extensions: 408933
Number of successful extensions: 1565
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1561
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -