Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0145
(614 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 30 1.1
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 30 1.1
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 30 1.1
AF003151-4|AAK18918.2| 142|Caenorhabditis elegans Hypothetical ... 30 1.5
AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical ... 30 1.5
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 30 1.5
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 29 3.5
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 29 3.5
AF016684-5|AAB66207.2| 297|Caenorhabditis elegans Hypothetical ... 29 3.5
AF016448-10|ABR92607.1| 849|Caenorhabditis elegans Smek (dictyo... 29 3.5
AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos... 29 3.5
Z79599-1|CAB01871.4| 493|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z79597-3|CAB01862.4| 493|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr... 28 6.1
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical... 28 6.1
Z48621-12|CAA88545.2| 425|Caenorhabditis elegans Hypothetical p... 27 8.1
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 27 8.1
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 27 8.1
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr... 27 8.1
U12964-2|AAL02498.1| 293|Caenorhabditis elegans Hypothetical pr... 27 8.1
AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical ... 27 8.1
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/83 (21%), Positives = 35/83 (42%)
Frame = +2
Query: 173 FIFSASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRR 352
F + T +T+P+ S + + SS S + P S LT+ P P++ + +
Sbjct: 450 FSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 509
Query: 353 NSSSQPTTGSSTLGVTHLRRGSS 421
++ P ST + G++
Sbjct: 510 LTTPSPNPSQSTSSLESSTSGAT 532
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/83 (21%), Positives = 35/83 (42%)
Frame = +2
Query: 173 FIFSASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRR 352
F + T +T+P+ S + + SS S + P S LT+ P P++ + +
Sbjct: 657 FSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 716
Query: 353 NSSSQPTTGSSTLGVTHLRRGSS 421
++ P ST + G++
Sbjct: 717 LTTPSPNPSQSTSSLESSTSGAT 739
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/83 (21%), Positives = 35/83 (42%)
Frame = +2
Query: 173 FIFSASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRR 352
F + T +T+P+ S + + SS S + P S LT+ P P++ + +
Sbjct: 657 FSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 716
Query: 353 NSSSQPTTGSSTLGVTHLRRGSS 421
++ P ST + G++
Sbjct: 717 LTTPSPNPSQSTSSLESSTSGAT 739
>AF003151-4|AAK18918.2| 142|Caenorhabditis elegans Hypothetical
protein D1007.13a protein.
Length = 142
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +1
Query: 253 PQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINAWGHTSPAWQLCT 426
P + +ST S P +S +YG+ + P F + ++WG T P L T
Sbjct: 15 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHPPEDLPT 72
>AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical
protein D1007.13b protein.
Length = 247
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +1
Query: 253 PQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINAWGHTSPAWQLCT 426
P + +ST S P +S +YG+ + P F + ++WG T P L T
Sbjct: 120 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHPPEDLPT 177
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +2
Query: 257 SKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPT---TGSSTLGVTHLRRGSS 421
S AS Q S TA PG + T +S + SSS T TGS+T+ T + +GSS
Sbjct: 925 STSASSSTQPIASSTTANPGSSTSGPTIASTQGSSSTQTNSNTGSTTVATT-VTQGSS 981
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +2
Query: 188 SRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQ 367
S T + + SQ+ + S S S +T P ++R+ +S+ +SS+Q
Sbjct: 682 SSTTSPVASSSSQMTSTQQPSGSSSSIGSTVNQGSSSVTTQPPASSRS--TASQGSSSAQ 739
Query: 368 PTTGSSTLGVT 400
P SST+G T
Sbjct: 740 PIASSSTMGST 750
Score = 29.1 bits (62), Expect = 2.6
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +2
Query: 203 TTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTA-SSRRNSSSQPTTG 379
TT P S SS ++P + + ++ P PTA + + SS +SS T G
Sbjct: 720 TTQPPASSRSTASQGSSSAQPIASSSTMGSTAGSSSPQPTASSTSVPSSTGATSSGSTVG 779
Query: 380 SSTLGVTHLRRGSS 421
SST+G T SS
Sbjct: 780 SSTMGSTQSSLPSS 793
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 120 ISP*TGDLRRDVNTQPSDSSSAHQELRLPQSPHSRR*KHVIDSRPTASQHR 272
+SP + DV P+ SS A E +P+SPH H++++ T + R
Sbjct: 2533 VSPVDAQEQVDVPHSPAPSSHAESEQPVPESPH-----HIVETTTTTTVTR 2578
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 120 ISP*TGDLRRDVNTQPSDSSSAHQELRLPQSPHSRR*KHVIDSRPTASQHR 272
+SP + DV P+ SS A E +P+SPH H++++ T + R
Sbjct: 2533 VSPVDAQEQVDVPHSPAPSSHAESEQPVPESPH-----HIVETTTTTTVTR 2578
>AF016684-5|AAB66207.2| 297|Caenorhabditis elegans Hypothetical
protein F45C12.8 protein.
Length = 297
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 428 MDYWRHARSIQAQSRLTADFEQHWRHARSIQAQPRLTASFEQHW 559
+D W+ AR+++A S++T FE + + S + ++H+
Sbjct: 252 LDQWKRARTLRAHSKMTVPFEHFFMSSVSKFISRNSQKTMQEHF 295
>AF016448-10|ABR92607.1| 849|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform b protein.
Length = 849
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 248 SSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPT 373
+S P+ P R ++ PGP+ + SS+ N S PT
Sbjct: 690 NSDRSPSRTPSPASSPRASSSPGPSRDDEVTSSQNNKESSPT 731
>AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform a protein.
Length = 1085
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 248 SSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPT 373
+S P+ P R ++ PGP+ + SS+ N S PT
Sbjct: 926 NSDRSPSRTPSPASSPRASSSPGPSRDDEVTSSQNNKESSPT 967
>Z79599-1|CAB01871.4| 493|Caenorhabditis elegans Hypothetical
protein C33A11.4 protein.
Length = 493
Score = 28.3 bits (60), Expect = 4.6
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +2
Query: 188 SRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQ 367
S +PA PA A S + PQQ + T L FTA S NS++
Sbjct: 21 SNSPALACPAPIFAPAPQRASPWPAALASPQQTTFTSPTGLSSSGPSAFTAVSPTNSANS 80
Query: 368 PTTGSSTL 391
TT ++T+
Sbjct: 81 LTTSTATI 88
>Z79597-3|CAB01862.4| 493|Caenorhabditis elegans Hypothetical
protein C33A11.4 protein.
Length = 493
Score = 28.3 bits (60), Expect = 4.6
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +2
Query: 188 SRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQ 367
S +PA PA A S + PQQ + T L FTA S NS++
Sbjct: 21 SNSPALACPAPIFAPAPQRASPWPAALASPQQTTFTSPTGLSSSGPSAFTAVSPTNSANS 80
Query: 368 PTTGSSTL 391
TT ++T+
Sbjct: 81 LTTSTATI 88
>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical
protein Y6B3B.1 protein.
Length = 1829
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 144 RRDVNTQPSDSSSAHQELRL---PQSPHSRR*KHVIDSRPTASQHRSLNRTIAADSPR 308
++D D S + +EL + PQ+P RR +++ TA + R + A++ PR
Sbjct: 817 KKDQPEASEDLSDSREELSVAAGPQAPKKRRRGRMMEDPETARKRRKGRKLEASEDPR 874
>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
protein Y6B3B.1 protein.
Length = 1829
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 144 RRDVNTQPSDSSSAHQELRL---PQSPHSRR*KHVIDSRPTASQHRSLNRTIAADSPR 308
++D D S + +EL + PQ+P RR +++ TA + R + A++ PR
Sbjct: 817 KKDQPEASEDLSDSREELSVAAGPQAPKKRRRGRMMEDPETARKRRKGRKLEASEDPR 874
>Z48621-12|CAA88545.2| 425|Caenorhabditis elegans Hypothetical
protein R07B1.8 protein.
Length = 425
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 178 LQRIKNSGYHNPRILADKSTSLTVVPQQASIAASTGPSQPT 300
LQ +K+ H P ++ + S+SL P A I P+Q T
Sbjct: 282 LQCVKSKSPHIPAMVIEMSSSLDEEPTSAKIQEQVTPAQLT 322
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 245 QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSS 421
+S+ + P+S + T+ GP++ + T SS SSS +T SST T ++ S+
Sbjct: 479 ESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTA-SSSVSSTASSTQSSTSTQQSST 536
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 245 QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSS 421
+S+ + P+S + T+ GP++ + T SS SSS +T SST T ++ S+
Sbjct: 479 ESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTA-SSSVSSTASSTQSSTSTQQSST 536
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.5 bits (58), Expect = 8.1
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = +2
Query: 194 TPATTIPAFSQIKARH*QSSHS-KPASQPQQDHRSRLTALPGPTARNFTASSRR---NSS 361
T T P+ S I + Q S S +P + + ++ P PT + + S +S
Sbjct: 1468 TTVTVPPSSSSIGSTAPQGSSSIQPIASSSTMGSTAGSSSPQPTVSSTSVPSSTGATSSG 1527
Query: 362 SQPTTGSSTLGVTHLRRGSS 421
S T GSST+G T SS
Sbjct: 1528 SSTTVGSSTVGATQTSVSSS 1547
>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
protein R07E4.1a protein.
Length = 1122
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 300 SPRFLVLRHATSLPHHAATVHRSPRPDHQRL 392
SP +V+ H T +P+ TVHR+ P H L
Sbjct: 60 SPPSIVVAHLTKVPNAIGTVHRA-APTHSGL 89
>U12964-2|AAL02498.1| 293|Caenorhabditis elegans Hypothetical
protein F26F4.6 protein.
Length = 293
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +3
Query: 378 DHQRLGSHISGVAALHTWTTGDTHAAFKLSLDSPQTSSSTGDTHAAFKLSLDSPQASSST 557
D L I VA+ T ++ ++ + S +SSS+ D ++A+ S PQA+SS+
Sbjct: 76 DSPNLTKVIDDVASGATGSSSLPSSSTESYSTSSSSSSSSSDLNSAYS-STSEPQATSSS 134
Query: 558 GP 563
P
Sbjct: 135 AP 136
>AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical
protein R10F2.6 protein.
Length = 1150
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 175 HLQRIKNSGYHNPRILADKS 234
H QRI+NSGY +L +KS
Sbjct: 355 HFQRIQNSGYWRSYVLKEKS 374
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,001,438
Number of Sequences: 27780
Number of extensions: 314511
Number of successful extensions: 1258
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -