Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0145
(614 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40950.1 68415.m05056 bZIP transcription factor family protei... 36 0.028
At1g77250.1 68414.m08997 PHD finger family protein contains Pfam... 30 1.1
At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2)... 30 1.4
At2g33880.1 68415.m04159 expressed protein 29 2.4
At4g23360.1 68417.m03369 expressed protein predicted proteins, A... 29 3.2
At4g16670.1 68417.m02518 expressed protein 29 3.2
At3g51640.1 68416.m05663 expressed protein 29 3.2
At4g37430.1 68417.m05298 cytochrome P450 81F1 (CYP81F1) (CYP91A2... 28 4.3
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 28 4.3
At4g17330.1 68417.m02600 agenet domain-containing protein contai... 28 4.3
At1g62920.1 68414.m07104 expressed protein ; expression supporte... 28 4.3
At1g35820.1 68414.m04451 hypothetical protein 28 4.3
At5g38560.1 68418.m04662 protein kinase family protein contains ... 28 5.7
At5g05190.1 68418.m00553 expressed protein similar to unknown pr... 28 5.7
At5g04460.1 68418.m00443 expressed protein 28 5.7
At4g03000.2 68417.m00408 expressed protein contains similarity t... 28 5.7
At4g03000.1 68417.m00407 expressed protein contains similarity t... 28 5.7
At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) simi... 28 5.7
At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pf... 28 5.7
At1g17210.1 68414.m02097 expressed protein distantly related to ... 28 5.7
At2g34830.1 68415.m04276 WRKY family transcription factor 27 7.5
At5g23770.1 68418.m02791 agenet domain-containing protein contai... 27 9.9
At5g04170.1 68418.m00405 calcium-binding EF hand family protein ... 27 9.9
At4g23350.1 68417.m03368 expressed protein predicted proteins, A... 27 9.9
At4g09600.1 68417.m01579 gibberellin-regulated protein 3 (GASA3)... 27 9.9
At4g00550.1 68417.m00076 UDP-galactose:MGDG galactosyltransferas... 27 9.9
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 27 9.9
>At2g40950.1 68415.m05056 bZIP transcription factor family protein
similar to AtbZIP transcription factor GI:17065880 from
[Arabidopsis thaliana]; contains Pfam profile: bZIP
transcription factor PF00170
Length = 721
Score = 35.5 bits (78), Expect = 0.028
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Frame = +2
Query: 173 FIFSASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRR 352
F F S T IPA + + A H +++ Q ++ R LPG + N T +R
Sbjct: 592 FQFDVSSTSGAIIPAATNVSAEHGKNTTDTHKQQNRRILRGLPIPLPG-SDFNLTKEHQR 650
Query: 353 NSSSQPTTGSSTLGVTHL---RRGSSAHMD 433
NSSS+ +S++ V+ L R G +D
Sbjct: 651 NSSSKEIKPASSMVVSVLVDPREGGDGDID 680
>At1g77250.1 68414.m08997 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 522
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -3
Query: 426 CAELPRRRCVTPSVDDPVVGCDELLRRDEAVKLRAVGPG-SAVSRLRWSC*GCDAGLL 256
C+ R C+T DD +V CD D+A + + P +V W C C A +L
Sbjct: 400 CSSCLCRNCLTDKDDDKIVLCDGC---DDAYHIYCMRPPCESVPNGEWFCTACKAAIL 454
>At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2) /
gibberellin-responsive protein 2 identical to SP|P46688
Gibberellin-regulated protein 2 precursor {Arabidopsis
thaliana}
Length = 99
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 582 VLRLACKGQCCSKLAVSRG*A*MLRACRQCCSK 484
V+++ C G+C + + S LRAC CCS+
Sbjct: 36 VVKIDCGGRCKDRCSKSSRTKLCLRACNSCCSR 68
>At2g33880.1 68415.m04159 expressed protein
Length = 378
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = +2
Query: 224 QIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTH 403
+++ H S HS P +QPQ P P+A + ++SS +S S S T+
Sbjct: 114 KLRLLHNHSKHSLPQTQPQPQ--------PQPSASSSSSSSSSSSKSTKPRKSKNKNNTN 165
Query: 404 LRRGSSAHM 430
L G S M
Sbjct: 166 LSLGGSQMM 174
>At4g23360.1 68417.m03369 expressed protein predicted proteins,
Arabidopsis thaliana contains Pfam profile PF03080:
Arabidopsis proteins of unknown function; expression
supported by MPSS
Length = 873
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 157 TRNHLIHLQRIKNSGYHNPRILADKSTSLT 246
T L+H QR+K+ G+ PR K+T+ T
Sbjct: 123 TMEDLMHAQRLKSMGFDGPRPFLTKTTNNT 152
>At4g16670.1 68417.m02518 expressed protein
Length = 429
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +1
Query: 184 RIKNSGYHNPRILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFI 363
R++ + H+ +A +T++ V + G + AS S HCL +
Sbjct: 157 RVEKAHLHSAVSIASLATAIAAVTASGNQDGFAGSKMSSALASASELLASHCLELAELAG 216
Query: 364 AAHDRIINA 390
A HDR+++A
Sbjct: 217 ADHDRVVSA 225
>At3g51640.1 68416.m05663 expressed protein
Length = 826
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 251 SHSKPASQPQQD-HRSRLTALPGPTARNFTASSRRNSSSQPTTGSS 385
S KP+ +P++ H+ + P P + N SR +++ QP SS
Sbjct: 479 SEPKPSREPKKSWHQLFARSTPAPVSSNVNTISRPSTNPQPNVQSS 524
>At4g37430.1 68417.m05298 cytochrome P450 81F1 (CYP81F1) (CYP91A2)
identical to cytochrome P450 81F1 (91A2) (SP:O65790)
[Arabidopsis thaliana]
Length = 500
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +2
Query: 311 PGPTARNFTASSRRNSSSQPTTGSST-LGVTHLRRGSSAHMDYWRHARSIQAQSRLTADF 487
P +FT + SS+P ++ + H G++ + D+WR+ R I +Q L++
Sbjct: 78 PSLAQESFTGQNDIVLSSRPLQLTAKYVAYNHTTVGTAPYGDHWRNLRRICSQEILSSHR 137
Query: 488 EQHWRHARSIQAQPRLT 538
+++H R + LT
Sbjct: 138 LINFQHIRKDEILRMLT 154
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 28.3 bits (60), Expect = 4.3
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +2
Query: 182 SASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSS 361
S R + P+ + +AR S S+ S+P+ RSR P +R+ S R+
Sbjct: 4 SPQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRG 63
Query: 362 SQPTTGSSTLGVTHL 406
S+ +TL VT L
Sbjct: 64 SEVENPGTTLYVTGL 78
>At4g17330.1 68417.m02600 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 1058
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +2
Query: 260 KPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQ----PTTGSSTLGVTHLRRGSSAH 427
KPA +P++ + +P +RN TAS + S P +G S G + SS+H
Sbjct: 912 KPAPKPKEKPGATARIIPRKDSRNTTASDMESDESAENRGPGSGVSFKGTVEEQTTSSSH 971
>At1g62920.1 68414.m07104 expressed protein ; expression supported
by MPSS
Length = 260
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 468 LDSPQTSSSTGDTHAAFKLSLDSPQASSSTGPCK 569
L++P+ S+ T ++KL L SP+A + PC+
Sbjct: 81 LENPRCSNQLTSTTTSWKLGLVSPKAQLNQVPCR 114
>At1g35820.1 68414.m04451 hypothetical protein
Length = 287
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 329 NFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDY 436
NF +++RR SS+Q + GSS + + RGS +
Sbjct: 149 NFWSTARRGSSAQRSGGSSRVSIGSGSRGSQRRQSF 184
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 208 NPRILADKSTSLTVVPQQASIAASTGPS 291
+P LA T L VVP++ IA TGP+
Sbjct: 188 DPSTLAPPPTPLPVVPREKPIAKPTGPA 215
>At5g05190.1 68418.m00553 expressed protein similar to unknown
protein (emb|CAB88044.1)
Length = 615
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +3
Query: 360 HRSPRPDHQRLGSHISGVAALH--TWTTGDTHAAFKLSLDSPQTSSSTGDTHAAFKLSLD 533
H +PR Q GS ISG + W +G H ++ SPQ + H ++ +
Sbjct: 397 HNNPRARGQGQGSRISGEMGRNHGGWYSGQLHNSYSSYSASPQRPMEQPEYHPRWRREIV 456
Query: 534 S 536
S
Sbjct: 457 S 457
>At5g04460.1 68418.m00443 expressed protein
Length = 863
Score = 27.9 bits (59), Expect = 5.7
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 2/101 (1%)
Frame = +2
Query: 278 QQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAH--MDYWRHAR 451
+++ S L AL G + SS S + S G R + A + WR
Sbjct: 103 RRNRESELIALAGLQTVSMLDSSFLRESQSQSPSSRRQGAASERPNTQASGILQMWRELE 162
Query: 452 SIQAQSRLTADFEQHWRHARSIQAQPRLTASFEQHWPLQAN 574
+R + R RS+++ L++S L N
Sbjct: 163 DEHVLNRARERVRERLRQQRSVESNTNLSSSIASESQLSEN 203
>At4g03000.2 68417.m00408 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +3
Query: 252 PTASQHRSLNRTIAADSPRFLVLRHATSLPHHAATVHRSPRPDHQRLGSHISGVAALHTW 431
P A +L+ + +DSP V H T+LP + A +P ++ GS ++ T
Sbjct: 384 PLAESSSTLSNSTKSDSPALDVKEHVTALPANNAP---APVASEKKSGSEPEEKPSVSTK 440
Query: 432 TTGDTHAA 455
D +AA
Sbjct: 441 PAPDYYAA 448
>At4g03000.1 68417.m00407 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +3
Query: 252 PTASQHRSLNRTIAADSPRFLVLRHATSLPHHAATVHRSPRPDHQRLGSHISGVAALHTW 431
P A +L+ + +DSP V H T+LP + A +P ++ GS ++ T
Sbjct: 384 PLAESSSTLSNSTKSDSPALDVKEHVTALPANNAP---APVASEKKSGSEPEEKPSVSTK 440
Query: 432 TTGDTHAA 455
D +AA
Sbjct: 441 PAPDYYAA 448
>At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) similar
to 60S ribosomal protein L34 GB:P41098 [Nicotiana
tabacum]
Length = 120
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/63 (23%), Positives = 25/63 (39%)
Frame = +2
Query: 269 SQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHA 448
S + ++ R+ PG T + R + P TG G+ HLR R+
Sbjct: 12 SYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNE 71
Query: 449 RSI 457
R++
Sbjct: 72 RTV 74
>At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies, 1
significant); similar to Trp-Asp repeat protein
(PIR:T40094) [Schizosaccharomyces]
Length = 447
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 350 RNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHARSIQA 463
+N + P +G S+ V + + D+WR++RSI++
Sbjct: 90 KNYENVPNSGESSEKVCKVTQKGGLFYDFWRNSRSIKS 127
>At1g17210.1 68414.m02097 expressed protein distantly related to
dentin phosphoryn [Homo sapiens] (GI:4322670)
Length = 958
Score = 27.9 bits (59), Expect = 5.7
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 209 IPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTG 379
+P + QS+ + S P ++ +SRL PGP+ + F+ASSR+ S + G
Sbjct: 275 LPNIQDCEEHSAQSARNGCPSGPARN-QSRLQD-PGPSRKQFSASSRKASGNYEVLG 329
>At2g34830.1 68415.m04276 WRKY family transcription factor
Length = 427
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +2
Query: 311 PGPTARNFTASSRRNSSS---QPTTGSSTLGVT 400
P PT RN A S R+SSS P++ SST T
Sbjct: 273 PWPTQRNALAGSTRSSSSSSLNPSSKSSTAAAT 305
>At5g23770.1 68418.m02791 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 438
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +2
Query: 437 WRHARSIQAQSRLTADFEQHWRHARSIQAQPRLTASFEQHWPLQ 568
WRH R + +Q R Q W R + +LT PL+
Sbjct: 105 WRHGRVMGSQERAIGTLSQKWYFVRLESTKKQLTFKQSDLRPLK 148
>At5g04170.1 68418.m00405 calcium-binding EF hand family protein low
similarity to peflin [Homo sapiens] GI:6015440; contains
INTERPRO:IPR002048 calcium-binding EF-hand domain
Length = 354
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 193 NSGYHNPRILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYG 324
+SG +NP + ++S VP AS S+ S PT+ +S SYG
Sbjct: 29 SSGGNNPPYGSSTTSSPYAVPYGASKPQSSSSSAPTYGSS-SYG 71
>At4g23350.1 68417.m03368 expressed protein predicted proteins,
Arabidopsis thaliana contains Pfam profile PF03080:
Arabidopsis proteins of unknown function
Length = 386
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 157 TRNHLIHLQRIKNSGYHNPRILADKSTSLTVVPQQASIAASTGPS 291
T L+H QR+K+ G+ PR ++ ++ + A GP+
Sbjct: 123 TMQDLMHAQRLKSMGFEGPRPFLTETNNMNFNGKFYDARADYGPN 167
>At4g09600.1 68417.m01579 gibberellin-regulated protein 3 (GASA3) /
gibberellin-responsive protein 3 identical to SP|P46687
Gibberellin-regulated protein 3 precursor {Arabidopsis
thaliana}
Length = 99
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 582 VLRLACKGQCCSKLAVSRG*A*MLRACRQCC 490
V+++ C G+C + + S LRAC CC
Sbjct: 36 VVKIDCGGRCKGRCSKSSRPNLCLRACNSCC 66
>At4g00550.1 68417.m00076 UDP-galactose:MGDG galactosyltransferase 2
/ digalactosyldiacylglycerol synthase 2 (DGD2) identical
to digalactosyldiacylglycerol synthase (DGD2)
GI:18141112 [Arabidopsis thaliana]
Length = 473
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = -3
Query: 210 IVVAGVLDALKMNQMVACSHHVAGHQFMEI-----YDKGKIFHRA 91
+V +AL M ++V C++H++ F + YD G+ F RA
Sbjct: 314 VVCTTTAEALAMGKIVVCANHISNKFFKQFPNCRTYDDGQGFVRA 358
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 27.1 bits (57), Expect = 9.9
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 182 SASRTPATTIPAFSQIKARH*QSSHSKPA-SQPQQDHRSRLTALPGPTARNFTASSRRNS 358
SAS TPA+T P+F A +S S PA S + +A PG + F SS +
Sbjct: 96 SASVTPASTTPSFGFGTA----ASSSAPAPSLFGSSTTNASSAAPGSSPFGFVTSS---A 148
Query: 359 SSQPTTGSSTLG 394
SS T SS G
Sbjct: 149 SSTATPSSSLFG 160
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,386,786
Number of Sequences: 28952
Number of extensions: 289941
Number of successful extensions: 1006
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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