Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0144
         (692 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q00V93 Cluster: Chromosome 15 contig 1, DNA sequence; n...    36   1.2  
UniRef50_Q2GKG3 Cluster: Conserved domain protein; n=1; Anaplasm...    34   3.8  
UniRef50_A6G4R2 Cluster: Putative uncharacterized protein; n=1; ...    34   3.8  

>UniRef50_Q00V93 Cluster: Chromosome 15 contig 1, DNA sequence; n=1;
           Ostreococcus tauri|Rep: Chromosome 15 contig 1, DNA
           sequence - Ostreococcus tauri
          Length = 622

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +2

Query: 35  LATKTRKESGSSHASTDTPSIKSE--KEYXXXXXXXXXNASGPMDGSSGRKSISHKDKTP 208
           +++K  ++       T + S K +  KE          +  G  D    +K+  HKD  P
Sbjct: 372 ISSKAERDESIVRNETSSKSSKEKVSKETEKRSHGVEADDEGSKDSHEHKKTSKHKDDAP 431

Query: 209 KSKISSIAVWDSP 247
           ++K++S A W SP
Sbjct: 432 EAKLTSAAPWASP 444


>UniRef50_Q2GKG3 Cluster: Conserved domain protein; n=1; Anaplasma
           phagocytophilum HZ|Rep: Conserved domain protein -
           Anaplasma phagocytophilum (strain HZ)
          Length = 1103

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +2

Query: 11  TRKDSISALATKTRKESGSSHASTDTPSIKSEKEY---XXXXXXXXXNASGPMDGSSGRK 181
           T   S+S +A+ T+  SGSS++  DTPS KS+  +                P   SSG  
Sbjct: 431 TAHKSVSPVASPTQSSSGSSNSLYDTPSSKSKSTFYVSMPTEQSPTPTIQSPAQSSSGSS 490

Query: 182 SISHKDKTPKSK 217
           +  +     KSK
Sbjct: 491 NSLYDTPASKSK 502


>UniRef50_A6G4R2 Cluster: Putative uncharacterized protein; n=1;
           Plesiocystis pacifica SIR-1|Rep: Putative
           uncharacterized protein - Plesiocystis pacifica SIR-1
          Length = 94

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 143 NASGPMDGSSGRKSISHKDKTPKSKISSIAVWDSPQLDEETVSRRG 280
           + + P   S  R+S++ +  TP+ +  S    DSP+L E  V+RRG
Sbjct: 11  SCASPRAVSPARRSVTTRSATPRLREGSWGPADSPELREHAVARRG 56


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 675,765,767
Number of Sequences: 1657284
Number of extensions: 13374423
Number of successful extensions: 32197
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32175
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)