Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0144
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      23   1.8  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    23   2.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.1  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   5.5  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   9.6  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 467 RVSVKSPLTGLFPIAFDRVVSDCLLTV 387
           R  V +PLTG+  +  + VV+ C  T+
Sbjct: 226 RSGVFAPLTGVGTLVVNDVVASCYATI 252


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 681 LFGYWYPMVYCYVRNHFHQQNGTDNNVIKKNCN 583
           L+ + Y  V CYV   +   + T++N+I   C+
Sbjct: 137 LYIFTYLSVTCYVTYAWSPIDHTESNIINDMCS 169


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 126 EIHATRMRPGLWTVRPAESLSRTRIKRPNLKSALLLSGIP 245
           ++H TR  P + T   AE      +   NL+  L   G P
Sbjct: 330 DVHGTRRGPKIKTQPKAEEAKPETLPFLNLQQQLPFPGYP 369


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 183 LSRTRIKRPNLKSALLLSG 239
           L+  ++K PNLK+ + + G
Sbjct: 86  LNALKVKNPNLKTLIAIGG 104


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 443 TGLFPIAFDRVVSDCLLTV 387
           +GL+P A D   +  LLTV
Sbjct: 221 SGLYPSAVDTTTNQKLLTV 239


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,274
Number of Sequences: 336
Number of extensions: 3375
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)