Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0144
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.21 
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       27   3.4  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    26   4.5  
SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|...    25   7.9  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   7.9  

>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 20/73 (27%), Positives = 30/73 (41%)
 Frame = +2

Query: 8   GTRKDSISALATKTRKESGSSHASTDTPSIKSEKEYXXXXXXXXXNASGPMDGSSGRKSI 187
           GTR  S   + + +   S SS +S+ +PS  S K           ++S     SS   S 
Sbjct: 138 GTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSK 197

Query: 188 SHKDKTPKSKISS 226
           S    +  SK S+
Sbjct: 198 SSSSSSSSSKSSA 210


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -3

Query: 261 SSSN*GESQTAIELILDLGVLSLCEIDFLPDEPSIGPDAFESRESL 124
           +S+N   +Q+A++L++DL + S  +   LP   S  P +  + ESL
Sbjct: 335 TSANASNTQSAMDLLIDLDIGSDAQSPSLPASSSQMPTSSFNMESL 380


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 639 NHFHQQNGTDNNVIKKNCNHEHPSPF 562
           NHFHQ++ T   + + + N  +PSPF
Sbjct: 619 NHFHQKSQTRRVMEQYDRNSWNPSPF 644


>SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 177

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 512 KNNIGRLLD*ADYGTRVSVKSPLTGLFPIAFDRVVSDCLLTVLC 381
           KN+ G L+D   YGT +   S +TG+     ++ V+ C+ +  C
Sbjct: 36  KNDPGVLID--KYGTEICFYSDITGILQELRNQKVTLCVASRTC 77


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 209 KSKISSIAVWDSPQLDEETVSRR 277
           KSK  S++  D   LDE+T  RR
Sbjct: 25  KSKFESLSTGDLTNLDEKTAKRR 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,530
Number of Sequences: 5004
Number of extensions: 54409
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)