Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0144
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56914| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_31470| Best HMM Match : SAND (HMM E-Value=5e-37)                    29   4.7  
SB_48824| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_25011| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_57292| Best HMM Match : Vicilin_N (HMM E-Value=1.2)                 28   8.3  
SB_40005| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                28   8.3  
SB_11073| Best HMM Match : Protamine_3 (HMM E-Value=1.4)               28   8.3  
SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29)               28   8.3  
SB_45541| Best HMM Match : Protamine_3 (HMM E-Value=1.4)               28   8.3  
SB_21256| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_56914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 406

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 195 RIKRPNLKSALLLSGIPLN*TK--RPFPGEDGAALTHRRHL 311
           RI R  L  ALL +GIPL   K  RPF  + G  LT R HL
Sbjct: 150 RIYRYELVEALLKAGIPLLKVKSLRPFLEKYGRRLTSRTHL 190


>SB_31470| Best HMM Match : SAND (HMM E-Value=5e-37)
          Length = 912

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 347 CVKCGDVWPASLKVASMC*RGAVLAWKRSLR 255
           C+K  D W    +  + C R +   WKRS+R
Sbjct: 197 CIKYNDEWMTPSEFEARCGRASSKDWKRSIR 227


>SB_48824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 574 MLMIAIFFYNIVICSILLVEMISNITIDHWIPI 672
           +++IA     I+I  I++V MIS I I+H I I
Sbjct: 252 IIIIAFIIVIIIISKIIMVMMISKIIINHQIII 284


>SB_25011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 574 MLMIAIFFYNIVICSILLVEMISNITIDHWIPI 672
           +++IA     I+I  I++V MIS I I+H I I
Sbjct: 83  IIIIAFIIVIIIISKIIMVMMISKIIINHQIII 115


>SB_57292| Best HMM Match : Vicilin_N (HMM E-Value=1.2)
          Length = 278

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 5   EGTRKDSISAL-ATKTRKESGSSHASTDTPSIKSEK 109
           E  RK +   L ATK RKESG      D P  K+++
Sbjct: 164 EDMRKKATERLSATKKRKESGEDKGEEDQPKRKTQR 199


>SB_40005| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 248

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 5   EGTRKDSISAL-ATKTRKESGSSHASTDTPSIKSEK 109
           E  RK +   L ATK RKESG      D P  K+++
Sbjct: 128 EDMRKKATERLSATKKRKESGEDKGEEDQPKRKTQR 163


>SB_11073| Best HMM Match : Protamine_3 (HMM E-Value=1.4)
          Length = 240

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 5   EGTRKDSISAL-ATKTRKESGSSHASTDTPSIKSEK 109
           E  RK +   L ATK RKESG      D P  K+++
Sbjct: 128 EDMRKKATERLSATKKRKESGEDKGEEDQPKRKTQR 163


>SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29)
          Length = 487

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
 Frame = +2

Query: 17  KDSISALATKTRKESGSSHASTDTPSIKSEKEYXXXXXXXXXNASGPMDGSSGRKSISHK 196
           KDS      +   ES S  +S  + S K  K              GP+  +SG+ S    
Sbjct: 248 KDSSEVERIRGAGESSSEPSSKRSQSTKGRKNVNKAPS----GVDGPLSDASGKSSKKAS 303

Query: 197 DKTP---KSKISSIAVWDSPQLDEETVSR 274
            K+P   K K SSI    +P+  +++ S+
Sbjct: 304 SKSPKVTKVKESSITSQKAPKSSKQSSSK 332


>SB_45541| Best HMM Match : Protamine_3 (HMM E-Value=1.4)
          Length = 226

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 5   EGTRKDSISAL-ATKTRKESGSSHASTDTPSIKSEK 109
           E  RK +   L ATK RKESG      D P  K+++
Sbjct: 164 EDMRKKATERLSATKKRKESGEDKGEEDQPKRKTQR 199


>SB_21256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 5   EGTRKDSISAL-ATKTRKESGSSHASTDTPSIKSEK 109
           E  RK +   L ATK RKESG      D P  K+++
Sbjct: 35  EDMRKKATERLSATKKRKESGEDKGEEDQPKRKTQR 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,113,662
Number of Sequences: 59808
Number of extensions: 430745
Number of successful extensions: 1077
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)