Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0144
         (692 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein ...    28   0.24 
AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical prot...    28   0.32 
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    25   2.3  
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    24   5.2  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    24   5.2  

>CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein
           protein.
          Length = 1087

 Score = 28.3 bits (60), Expect = 0.24
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 328 TSPHLTQAHTYVPSFLLIHNTVKRQSETTRSKAIGNNPVKGDL 456
           T  HL + H +V SFLL+  TV+ +      + +  N  +G +
Sbjct: 348 TKRHLARMHAFVKSFLLLGGTVRSKMLDWIGRCLHANVPRGQI 390


>AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical protein
           protein.
          Length = 257

 Score = 27.9 bits (59), Expect = 0.32
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 2/122 (1%)
 Frame = +3

Query: 6   KVLGRTASALLQRKHVK-KAAAHTRLQIRRVLSPK-KNMIGEEIHATRMRPGLWTVRPAE 179
           + +GRT S  +    V+ K     RL+++   + + K     EI A +          A+
Sbjct: 119 ETIGRTFSKFMTLGKVRGKQTPRKRLRLKHTFAQEAKQFCNAEIRAAK----------AD 168

Query: 180 SLSRTRIKRPNLKSALLLSGIPLN*TKRPFPGEDGAALTHRRHLQRRRPNVAALDTSSHI 359
           S       R     A+  +  P++   +P  GE G  + HR    R   N   +  S H+
Sbjct: 169 SPENCHSNRAEFLIAIFTTVQPMH-ASQPLRGETGNWVQHRAQRNRTNNNNTIITDSGHM 227

Query: 360 RT 365
           R+
Sbjct: 228 RS 229


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = -1

Query: 425 AFDRVVSDCLLTVLCIRRNDGTYV*ACVKCGDVWPASLKVASMC*RGAVLAWKRSLRLIE 246
           A+D V    LL VL + + DG  +        +W  SL V      G V+   RSL +  
Sbjct: 610 AYDSVPHSYLLKVLQLYKVDGNVIKLMQHAMGMWSTSLHVTD----GKVVLRSRSLNIRR 665

Query: 245 G 243
           G
Sbjct: 666 G 666


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 146 ASGPMDGSSGRKSISHKDKTPKSKISSIA 232
           +SG  DG++GR  IS K  +P S + S++
Sbjct: 161 SSGANDGNNGRPEISPK-LSPGSVVESVS 188


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 450 PFDRVISDCL*PGCFRLPFDR 388
           PF RV  +CL   CF  P+ +
Sbjct: 460 PFRRVFQECLDMSCFPQPWKK 480


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 713,650
Number of Sequences: 2352
Number of extensions: 13544
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70250040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)