Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0144
         (692 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF207702-1|AAG35710.1|  911|Homo sapiens homeodomain-interacting...    30   6.8  
AK098303-1|BAC05281.1|  173|Homo sapiens protein ( Homo sapiens ...    30   9.0  
AK098288-1|BAC05277.1|  173|Homo sapiens protein ( Homo sapiens ...    30   9.0  

>AF207702-1|AAG35710.1|  911|Homo sapiens homeodomain-interacting
           protein kinase 2 protein.
          Length = 911

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 155 PMDGSSGRKSISHKDKTPKSKISSIAVWDSPQLDEET 265
           P   +S RKS  H  K  K+ IS + V DSP  D  +
Sbjct: 788 PTSTTSSRKSKQHVSKQRKNVISCVTVHDSPYSDSSS 824


>AK098303-1|BAC05281.1|  173|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40984 fis. ).
          Length = 173

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +3

Query: 150 PGLWTVRPAESLSRTRIKRPNLKSALLLSGIPLN*TKRPFP 272
           PGL      +     R KRP L S L+ S  PL+ T  PFP
Sbjct: 56  PGLLQELSTQGQGEPREKRPGLLSFLICSCPPLSSTPLPFP 96


>AK098288-1|BAC05277.1|  173|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40969 fis, clone UTERU2012688. ).
          Length = 173

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +3

Query: 150 PGLWTVRPAESLSRTRIKRPNLKSALLLSGIPLN*TKRPFP 272
           PGL      +     R KRP L S L+ S  PL+ T  PFP
Sbjct: 56  PGLLQELSTQGQGEPREKRPGLLSFLICSCPPLSSTPLPFP 96


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,080,505
Number of Sequences: 237096
Number of extensions: 1975723
Number of successful extensions: 3951
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3951
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)