Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0144
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025462-1|AAN72423.1| 1068|Caenorhabditis elegans Phospholipase...    32   0.45 
AF025462-2|AAN72422.1| 1075|Caenorhabditis elegans Phospholipase...    31   0.59 
Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.     28   7.3  
AL022271-1|CAA18349.1|  919|Caenorhabditis elegans Hypothetical ...    27   9.6  
AC006775-2|AAF60621.2|  557|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AF025462-1|AAN72423.1| 1068|Caenorhabditis elegans Phospholipase c
           like protein 1,isoform b protein.
          Length = 1068

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +2

Query: 77  STDTPSIKSEKEYXXXXXXXXXNASGPMDGSSGRKSISHKDKTPKSKISSIA-VWDSPQL 253
           S D P  K  K            A  P    SGRK++S   K   +KIS+++  W+  Q 
Sbjct: 19  SLDVPFAK-RKTLRSSIIKHGGRAKSPAGTGSGRKTVSFSSKNSDAKISNVSDCWNYMQT 77

Query: 254 DEETVSRRG 280
             + V  RG
Sbjct: 78  GSDFVKLRG 86


>AF025462-2|AAN72422.1| 1075|Caenorhabditis elegans Phospholipase c
           like protein 1,isoform a protein.
          Length = 1075

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 146 ASGPMDGSSGRKSISHKDKTPKSKISSIA-VWDSPQLDEETVSRRG 280
           A  P    SGRK++S   K   +KIS+++  W+  Q   + V  RG
Sbjct: 48  AKSPAGTGSGRKTVSFSSKNSDAKISNVSDCWNYMQTGSDFVKLRG 93


>Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical
           protein F44F4.4 protein.
          Length = 890

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -3

Query: 153 PDAFESRESLLLS-YSFSDLILGVSVDACELPLS-LRVFVARALMLS 19
           P++FE+  +  LS   F  +  GVS D C LPL  + +++A+   LS
Sbjct: 807 PNSFETNLNFALSSVGFPVIQAGVSTDFCALPLGFMELYMAKMFALS 853


>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical
           protein C09D8.1a protein.
          Length = 2180

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 467 RVSVKSPLTGLFPIAFDRVVSDCLLTVLCIRRNDG 363
           R+S+KS  TGL  + F+RV  D   TV+    ++G
Sbjct: 93  RISIKSLATGLSTLRFERVSLDDNATVVSCSADNG 127


>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical
           protein C09D8.1a protein.
          Length = 2180

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 467 RVSVKSPLTGLFPIAFDRVVSDCLLTVLCIRRNDG 363
           R+S+KS  TGL  + F+RV  D   TV+    ++G
Sbjct: 93  RISIKSLATGLSTLRFERVSLDDNATVVSCSADNG 127


>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
          Length = 2200

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 467 RVSVKSPLTGLFPIAFDRVVSDCLLTVLCIRRNDG 363
           R+S+KS  TGL  + F+RV  D   TV+    ++G
Sbjct: 93  RISIKSLATGLSTLRFERVSLDDNATVVSCSADNG 127


>AL022271-1|CAA18349.1|  919|Caenorhabditis elegans Hypothetical
           protein F32F2.1 protein.
          Length = 919

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +3

Query: 303 RHLQRRRPNVAALDTSSHIRTIISSDTQHGQKAIGNNPVKGNRK 434
           ++L++RR +V A + S+  R++ +S    G K   + P+K  +K
Sbjct: 579 KYLEKRRKSVDAKEESNRRRSLSASRLLGGSKTSISEPIKEEQK 622


>AC006775-2|AAF60621.2|  557|Caenorhabditis elegans Hypothetical
           protein Y46H3B.1 protein.
          Length = 557

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 325 QTSPHLTQAHTYVPSFLLIHNTVKRQSETTRSKAIGNNPV 444
           Q SP++ Q   +V +F+     ++  +ET     + NNP+
Sbjct: 203 QVSPYIYQYPNFVSTFVDTDTMIRNLNETINHDCVRNNPL 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,532,778
Number of Sequences: 27780
Number of extensions: 314835
Number of successful extensions: 812
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)