Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0144
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein...    31   0.96 
At1g43760.1 68414.m05034 hypothetical protein                          30   1.3  
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat...    29   2.2  
At3g11860.1 68416.m01454 expressed protein ; expression supporte...    29   2.9  
At4g00480.1 68417.m00066 myc-related transcription factor (MYC1)...    28   5.1  
At1g38131.1 68414.m04669 expressed protein contains Pfam PF03138...    28   5.1  
At5g56260.1 68418.m07021 dimethylmenaquinone methyltransferase f...    27   8.9  

>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 282

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 162 TVRPAESLSRTRIKRPNLKSALLLSGIPLN*TKRPFP 272
           ++ PA  +++TR++RP L   LLLS   L    R FP
Sbjct: 57  SIAPAPKVTKTRVQRPKLTPELLLSEDGLGYVLRYFP 93


>At1g43760.1 68414.m05034 hypothetical protein
          Length = 626

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +3

Query: 159 WTVRPAESLSRTRIKRP--NLKSALLLSGIPLN*TKRPFPGEDGAALTHRRHLQRRRPNV 332
           W  +    ++R+ +K P  +L  ++L+S IP      P+P   GA  +  R   R + N+
Sbjct: 88  WVKKSTTGVARSPVKPPESHLPESVLVSAIPSE-DSFPYPPGWGAMSSKSRKRWRHKWNI 146

Query: 333 AALDTSSHIRTIISS 377
           +    + HI  +  S
Sbjct: 147 SRSSAADHISKVSGS 161


>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator of
            chromosome condensation (RCC1) family protein similar to
            zinc finger protein [Arabidopsis thaliana]
            gi|15811367|gb|AAL08940
          Length = 1028

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 23/114 (20%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
 Frame = +3

Query: 96   LSPKKNMIGEEIHATRMRPGLWTVRPAESLSRTRIKRPNLKSALLLSGIPLN*TKRPFPG 275
            L+ K + + EE+  T+ +  + T   A+     R  +  ++S  L + +     K+    
Sbjct: 856  LASKAHQLEEELEKTKRQLKVVTAMAADEAEENRSAKEVIRS--LTTQLKEMAEKQ---S 910

Query: 276  EDGAALTHRRHLQRRRPN-VAALDTSSHIRTIISSDTQHGQKAIGNNPVKGNRK 434
            +  +  T+ +H  + +   V      +HIR+++S D+Q+       +   G+RK
Sbjct: 911  QKDSISTNSKHTDKEKSETVTQTSNQTHIRSMVSQDSQNENNLTSKSFANGHRK 964


>At3g11860.1 68416.m01454 expressed protein ; expression supported
           by MPSS
          Length = 252

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +1

Query: 298 IDATFNDAGQTSPHLTQAHTYVPSFLLIHNTVKRQSETTRSKA 426
           ++A F ++ + +   T  HT VPS  L  + ++ + ET+ S+A
Sbjct: 89  LEAGFRESMEVTQDSTFVHTVVPSLPLPEHFIRHKPETSESQA 131


>At4g00480.1 68417.m00066 myc-related transcription factor (MYC1)
           identical to ATMYC1 GI:1853965 from [Arabidopsis
           thaliana]
          Length = 526

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/65 (29%), Positives = 35/65 (53%)
 Frame = +3

Query: 228 LLSGIPLN*TKRPFPGEDGAALTHRRHLQRRRPNVAALDTSSHIRTIISSDTQHGQKAIG 407
           +L  +PL  TKR FP ++ + L       RR+ N    +  S +RT++ +  +  +++I 
Sbjct: 318 ILHDVPLMHTKRMFPSQN-SGLNQDDPSDRRKEN----EKFSVLRTMVPTVNEVDKESIL 372

Query: 408 NNPVK 422
           NN +K
Sbjct: 373 NNTIK 377


>At1g38131.1 68414.m04669 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator -related'  based on similarity to axi
           1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 589

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = -3

Query: 630 HQQNGTDNNVIKKN---CNHEHPSP 565
           HQ NG++N V+  N   C  E PSP
Sbjct: 7   HQPNGSNNGVVSSNDNGCRSESPSP 31


>At5g56260.1 68418.m07021 dimethylmenaquinone methyltransferase
           family protein similar to bacterial
           S-adenosylmethionine:2-demethylmenaquinone
           methyltransferases; contains Pfam profile PF03737:
           Dimethylmenaquinone methyltransferase
          Length = 166

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 375 SDTQHGQKAIGNNPVKGNRK*PGQRGLNANAGAVV 479
           +D   G +A+G+NP+K  +K  G++ +  + G  +
Sbjct: 109 NDCDVGVRALGSNPLKSTKKGHGEKNVPVHIGGTL 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,677,013
Number of Sequences: 28952
Number of extensions: 293230
Number of successful extensions: 753
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)