Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0143
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    29   0.61 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   1.8  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   3.2  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   5.6  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   5.6  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   7.5  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    25   7.5  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   9.9  

>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 100 LRESHQYYRAVVRMHLVLL 156
           L+ESHQ YR +V +HL LL
Sbjct: 297 LKESHQIYRKMVSLHLELL 315


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
 Frame = +1

Query: 238 SIENGVQAKSDGSHKYLSITQGPLPSYAH-----TPGTTIELTCEAAGSPAPSVHWFKND 402
           S +N    K+D S +    T     +Y++     T  T  + T E   S +       N 
Sbjct: 244 STQNPTANKTDASQQSTESTSSSASAYSYITTLQTATTAQQTTSENTYSTSGPNLTTSNT 303

Query: 403 SPVYEYDVESNELIDSSPTSIARISSTLIVTRTTS 507
           SP     + S+  I  SP+     SST  +T  ++
Sbjct: 304 SPQISSTISSSSFIVESPSVALSTSSTTTITNAST 338


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 328 PGTTIELTCEAAGSPAPSVHWFKNDSP 408
           PG T + TC   GS   +V++ KN  P
Sbjct: 427 PGCTYDNTCSQRGSVIANVYFAKNKQP 453


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 187 QSAHLNKHIKLLSDIDNSIENGVQAKSDGSHKYLSITQ 300
           Q AH+N+    +SD+DNS    V+   +G+   +S+ +
Sbjct: 47  QCAHMNRRPAWISDLDNSSLEVVRHLGEGNGGAVSLVK 84


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/76 (21%), Positives = 32/76 (42%)
 Frame = +1

Query: 280 KYLSITQGPLPSYAHTPGTTIELTCEAAGSPAPSVHWFKNDSPVYEYDVESNELIDSSPT 459
           K+L +    +    +TPG T ++      +P PS +           +  ++ +  ++ T
Sbjct: 8   KFLLLVTAVMAQTEYTPGFTTDVATTVTPTPLPSANVTTTSFSSASTETSTHSVTSTNIT 67

Query: 460 SIARISSTLIVTRTTS 507
           SI    ST   + TT+
Sbjct: 68  SIVPPPSTSHNSTTTT 83


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 654 GAIGDHDARLQREQLSAFRELSSAIC 577
           GAI  HD R+   Q+   +  SS +C
Sbjct: 283 GAIHHHDVRIANHQIGTLQGHSSEVC 308


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 241 IENGVQAKSDGSHKYLSITQGPLPSYAHTPGTTIELT 351
           +EN ++ K+    K ++ITQ P   Y   P +T+ELT
Sbjct: 268 LENCLECKTA---KVVNITQKPKTKYKPLPLSTVELT 301


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = +1

Query: 172 LLGSCQSAHLNKHIKLLSDIDNSIENGVQAKSDGSHKYLSITQGPLPSYAHTPGTTIE 345
           +L  CQ      H   L+DI  SI    +   DG   Y+S   G +  +    G  IE
Sbjct: 549 MLTYCQDGISLTHSLKLTDIPRSIVYSQKYGDDGGTLYVSTNNGYVLMFNFQNGQVIE 606


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,394,980
Number of Sequences: 5004
Number of extensions: 44730
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)