Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0143
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21630.1 68415.m02573 transport protein, putative similar to ...    31   0.92 
At3g53930.1 68416.m05958 protein kinase family protein contains ...    28   6.5  
At3g42850.1 68416.m04489 galactokinase, putative contains some s...    27   8.5  
At1g13810.1 68414.m01621 expressed protein ; expression supporte...    27   8.5  

>At2g21630.1 68415.m02573 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 761

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 283 YLSITQGPLPSYAHTPGTTIELTCEAAGSPAPSVHWFKNDS 405
           Y S+    LP       TT+E  C++  SP+P V  F  D+
Sbjct: 95  YSSVADNNLPPELFPHSTTVEYLCDSFSSPSPPVFLFVVDT 135


>At3g53930.1 68416.m05958 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 711

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +1

Query: 316 YAHTPGTTIELTCEAAGSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIA 468
           Y    G  +++   ++GSP P  + FK+ SP  E+ ++ N    ++P  IA
Sbjct: 421 YVLISGPPVDIPSSSSGSPKPFNYPFKSHSPPVEF-IKRNVTNLTAPMPIA 470


>At3g42850.1 68416.m04489 galactokinase, putative contains some
           similarity to galactokinase [Pasteurella multocida]
           SWISS-PROT:P57899
          Length = 964

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 67  LRIDFAKKEFFLRESHQYYRAVVRMHLVLLFTVAALLGSCQSAHLNKHIKLLSDIDNSIE 246
           +R D+  +E FLR+  +YY+  V M          LL  C + +L + + L    D  I+
Sbjct: 304 VRRDYFNEEPFLRKMLEYYQGGVEM------IRRDLLAGCWAPYLERAVTLKPCYDGGID 357

Query: 247 NG-VQAK 264
            G V AK
Sbjct: 358 GGEVAAK 364


>At1g13810.1 68414.m01621 expressed protein ; expression supported
           by MPSS
          Length = 303

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 176 WARASPPI*INTLSCFRTSITVLRMVCKQNLMDLINIYRSRKAPY 310
           W  ASP   IN +    TS  VL + C  +  D   +Y  +K PY
Sbjct: 146 WLGASPDGVINVVKDGVTSCGVLEVKCPFDNRDNSKVYPWKKVPY 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,436,889
Number of Sequences: 28952
Number of extensions: 234429
Number of successful extensions: 597
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)