Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0142
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 405 e-114
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 402 e-113
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 208 8e-55
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 129 5e-31
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 34 0.024
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.53
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.6
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 27 2.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.8
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 3.7
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 4.9
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.5
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 6.5
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 6.5
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 8.6
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 405 bits (996), Expect = e-114
Identities = 179/246 (72%), Positives = 213/246 (86%)
Frame = +3
Query: 3 ANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSV 182
+NNYARGHYT+GKE++D VL+RIR++AD C+GLQGFL+FH LL+ERL++
Sbjct: 104 SNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNM 163
Query: 183 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 362
+YGKKS L+F++YPAPQVST+VVEPYNS+LTTH TL++SDC FMVDNEA YDICRRNLDI
Sbjct: 164 EYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDI 223
Query: 363 ERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAE 542
ERPTY NLNRLI Q+VSSITASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++SA
Sbjct: 224 ERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAA 283
Query: 543 KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAGIATIKTKR 722
KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV A + +IK++R
Sbjct: 284 KAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRR 343
Query: 723 TIQFVD 740
TIQFVD
Sbjct: 344 TIQFVD 349
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 402 bits (989), Expect = e-113
Identities = 179/246 (72%), Positives = 211/246 (85%)
Frame = +3
Query: 3 ANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSV 182
+NNYARGHYT+GKE+VD V D+IR++AD C+GLQGFL+FH LL+ERL++
Sbjct: 100 SNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAM 159
Query: 183 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 362
+Y KKSKL+F++YPAPQVST+VVEPYNS+LTTH TL+ +DC FMVDNE+ YDICRRNLDI
Sbjct: 160 EYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDI 219
Query: 363 ERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAE 542
ERP+Y NLNRLI Q+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++SA
Sbjct: 220 ERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAA 279
Query: 543 KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAGIATIKTKR 722
KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV A + TIK KR
Sbjct: 280 KAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKR 339
Query: 723 TIQFVD 740
TIQFVD
Sbjct: 340 TIQFVD 345
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 208 bits (507), Expect = 8e-55
Identities = 96/245 (39%), Positives = 148/245 (60%)
Frame = +3
Query: 6 NNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVD 185
N +A+GHYT G E+ D VLD +R+ A+ C LQGF + H LL+ ++ +
Sbjct: 99 NIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREE 158
Query: 186 YGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIE 365
Y + F++ PAP+ S VVEPYN+ L+ H +E+SD F +DNEA+ I L I+
Sbjct: 159 YPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIK 218
Query: 366 RPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEK 545
P+Y +LN L+ +++ +T S RF G LN DL + N+VP+PR+HF +V +AP+ +
Sbjct: 219 SPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGS 278
Query: 546 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAGIATIKTKRT 725
+ + +SV E+T F+ N MV DPRHG+Y+ L+RG V K+V+ I +++TK +
Sbjct: 279 SSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNS 338
Query: 726 IQFVD 740
FV+
Sbjct: 339 AYFVE 343
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 129 bits (311), Expect = 5e-31
Identities = 74/249 (29%), Positives = 127/249 (51%), Gaps = 5/249 (2%)
Frame = +3
Query: 6 NNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVD 185
NN+A G Y+ + I + ++D I + AD L+GF + H L+ERL+
Sbjct: 102 NNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDR 160
Query: 186 YGKKSKLEFAIYPAPQ-VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 362
Y KK ++++P Q VS VV+PYNS+L ++D ++DN A+ I L
Sbjct: 161 YPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHT 220
Query: 363 ERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS-- 536
+ PT+ N+L+ ++S+ T +LR+ G +N DL +L+P PR HF L +Y P +
Sbjct: 221 QNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQ 280
Query: 537 -AEKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAGIATI 710
E + +V ++ P NQMV +P + +++ + +G+ P DV+ + I
Sbjct: 281 VEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRI 340
Query: 711 KTKRTIQFV 737
+ +R F+
Sbjct: 341 RERRYASFI 349
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 33.9 bits (74), Expect = 0.024
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = -1
Query: 488 RHQVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDG 327
R + E + H ++ + Q+SSD ++ +D T VG+G AL I + D +DG
Sbjct: 165 RRVLQAERAKEHRSNSNDKQKSSDNDEDPNDTT--VGIGAALAASILSVDSVDG 216
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.5 bits (63), Expect = 0.53
Identities = 23/80 (28%), Positives = 41/80 (51%)
Frame = +1
Query: 499 STSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSY 678
STS + T SS RP +S S +H SS ++ ++ PV ++ + + +S+
Sbjct: 377 STSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKS-SSAPVSSAFYHNSTSSRSSSH 435
Query: 679 PRM*TRASLPSKPSVLSNSS 738
+ +SL SKP + ++SS
Sbjct: 436 SSSHSLSSLSSKPILTASSS 455
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = +3
Query: 576 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAGI 701
+ ACFEP N C H K C L + KD N +
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 463 PSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 609
P+++ P S + T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1232 PTAKAPPVPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.5 bits (58), Expect = 2.1
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Frame = -1
Query: 521 VRDQWEVDTGVRHQVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAA 342
V D VDT V + +A ES R++ D S Q + E T A
Sbjct: 454 VADDDAVDTSVTATDDFD-ASASSSNAYESYRNTYTDDMDSSSIYQTSLSNVKTEETTPA 512
Query: 341 DV---IDGFIV-----DHESTVRVLKGCVGGEDRVVGLDDGSGNLRRGVDG 213
+ +DG ++ +HE V+ G E ++ DDGSG +R +DG
Sbjct: 513 EPASKVDGVVLYDFTGEHEG---VITASEGQEFTLLEPDDGSGWVRVKIDG 560
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.8
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +1
Query: 457 TSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTM--NSFPSPRSQTHASSPPTRW*NATPV 630
TS S L+ + +++ T S+ P PT+ S +P + T+ ++ + +TPV
Sbjct: 381 TSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPV 440
Query: 631 MASTWLAVCCTVVTSYPRM*TRASLPSKPSVLSN 732
++ CT TS P T + S P +N
Sbjct: 441 TSTPLATTNCTTSTSVPY--TSTPVTSTPLTTTN 472
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.6 bits (56), Expect = 3.7
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = -1
Query: 686 ILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGKLFMVGLLGRDDWRVRDQW 507
+LGY ++ A++V+A + V HL+ G D + K G D R Q+
Sbjct: 413 LLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK-------GLDMLVDRVQY 465
Query: 506 EVDTGVR 486
E++ G++
Sbjct: 466 ELEAGLQ 472
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 526 QSSLPRRPTMNSFPSPRSQTHASSPPTR 609
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 460 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSP 600
SPS LT L S++ S + + + R+ T +S SP+ Q+ S+P
Sbjct: 619 SPSKMLT-TLRNNSSTFPSLRKNAMIARKSTADSLSSPKRQSVPSTP 664
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 681 WVRRHHGTAYSKPCTCHDGG 622
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +1
Query: 487 LTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMAS 639
LTP + S +S + +S +R ++N+ PS + +H+SS T + PV+++
Sbjct: 130 LTPKNPSLFSSSNAAS--QRGSLNTAPSNFAYSHSSSLQTSASSRPPVLSN 178
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -1
Query: 482 QVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDGFIVDHE 309
Q ++ VH ++A E R N + QVG +N ++ D+ + F+ D+E
Sbjct: 601 QSQIKSQSVHHENAAEEIRKMRNLRNSRINSQQVGEKVFVNPDVKTMDIQETFLQDYE 658
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,185,014
Number of Sequences: 5004
Number of extensions: 67264
Number of successful extensions: 232
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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