Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0139
         (707 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       30   0.016
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    30   0.016
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    30   0.016
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    23   3.2  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   7.4  

>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 30.3 bits (65), Expect = 0.016
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 595 LRKSERRIKELTFQAEEDRKNHERMQDLVDKLQQKIK 705
           L+K  R +KE+  QA  +R+  ER +    + QQKI+
Sbjct: 61  LKKELRAVKEINEQARREREEQERHKQQQQEKQQKIE 97


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 30.3 bits (65), Expect = 0.016
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 595 LRKSERRIKELTFQAEEDRKNHERMQDLVDKLQQKIK 705
           L+K  R +KE+  QA  +R+  ER +    + QQKI+
Sbjct: 212 LKKELRAVKEINEQARREREEQERHKQQQQEKQQKIE 248


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 30.3 bits (65), Expect = 0.016
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 595 LRKSERRIKELTFQAEEDRKNHERMQDLVDKLQQKIK 705
           L+K  R +KE+  QA  +R+  ER +    + QQKI+
Sbjct: 271 LKKELRAVKEINEQARREREEQERHKQQQQEKQQKIE 307


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/41 (21%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 436 EQQIKELQVRL-DEAEANALKGGKKAIQKLEQRVRELENEL 555
           +Q++ +  +++  +     ++  KKA+QKL + V + + +L
Sbjct: 61  DQKVMDYFIKMVKQKHKKDIRADKKALQKLRREVEKAKRDL 101


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 135 RVPHTLGAGRPRPSPGRA 188
           +VP   G GR  P P R+
Sbjct: 320 QVPQLAGGGRRGPGPARS 337


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.310    0.126    0.317 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,750
Number of Sequences: 336
Number of extensions: 1225
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)