Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0136
         (557 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q75C93 Cluster: ACR023Wp; n=1; Eremothecium gossypii|Re...    33   3.4  
UniRef50_Q4P5F7 Cluster: Putative uncharacterized protein; n=1; ...    33   6.0  

>UniRef50_Q75C93 Cluster: ACR023Wp; n=1; Eremothecium gossypii|Rep:
           ACR023Wp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 769

 Score = 33.5 bits (73), Expect = 3.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 8   PRPSDPKPTSPARGAPCRSTNEALARRGRH 97
           P P DP+PTSPA+ A  R ++ +L   G H
Sbjct: 550 PPPGDPQPTSPAQNATRRPSDASLGYPGSH 579


>UniRef50_Q4P5F7 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 897

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 17  SDPKPTSPARGAPCRSTNEALARRGRHGTTVAYIVXDSGSDHK 145
           +DP P+SP    P  +  EA+AR  +  + V  IV  +G D++
Sbjct: 348 ADPNPSSPTHSRPAANWTEAIARIEKLDSYVRRIVFQAGLDYE 390


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 492,441,710
Number of Sequences: 1657284
Number of extensions: 8510890
Number of successful extensions: 21472
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21420
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37071859483
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)