Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0136
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    26   4.3  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    25   5.7  
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    25   7.5  
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    25   7.5  
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    25   10.0 

>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 5   LPRPSDPKPTSPARGAPCRSTNEALARR 88
           + +  +P P S A  +P + + EALA R
Sbjct: 59  IQKKKEPSPASSASASPVKKSAEALAER 86


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 50  APCRSTNEALARRGRHGTTV 109
           A C ST  +L R+ RHG TV
Sbjct: 420 ANCSSTKTSLWRKDRHGQTV 439


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 44  RGAPCRSTNEALARRGRHGTTVAYIV 121
           +G PC+  + + ++ G+HG    +IV
Sbjct: 36  KGRPCKIVDMSTSKTGKHGHAKVHIV 61


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 44  RGAPCRSTNEALARRGRHGTTVAYIV 121
           +G PC+  + + ++ G+HG    +IV
Sbjct: 36  KGRPCKIVDMSTSKTGKHGHAKVHIV 61


>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 65  TNEALARRGRHGTTVAYIVXDSG 133
           T+ A    G HGTT+  ++ DSG
Sbjct: 205 THSATKWIGGHGTTIGGVIVDSG 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,780
Number of Sequences: 5004
Number of extensions: 36056
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)