Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0136
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0183 + 17642639-17643428,17644507-17644949                       30   1.1  
01_01_0564 - 4152189-4153643                                           27   7.7  

>06_03_0183 + 17642639-17643428,17644507-17644949
          Length = 410

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 5   LPRPSDPKPTSPARGAPCRSTN-EALARRGRHGTTVAYIVXDSG 133
           LPR  D +  +  R  P  ST+ EA ARR R     A+++ DSG
Sbjct: 358 LPRQRDARSIAHLRCEPAASTSPEAAARRRRLVQATAWLLWDSG 401


>01_01_0564 - 4152189-4153643
          Length = 484

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 103 GSVTTTPRQSLVC*SAGCAASRRGWLWIRR 14
           GS++T  R+ +   S G AAS R +LW+ R
Sbjct: 314 GSLSTMSRRQIAEVSRGMAASGRPFLWVLR 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,975,754
Number of Sequences: 37544
Number of extensions: 224597
Number of successful extensions: 635
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)