Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0136
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_7996| Best HMM Match : efhand (HMM E-Value=1.4)                     28   4.5  
SB_41099| Best HMM Match : VWA (HMM E-Value=0)                         27   7.9  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         27   7.9  
SB_19811| Best HMM Match : RVT_1 (HMM E-Value=3.5e-32)                 27   7.9  
SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)                 27   7.9  

>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 8    PRPSDPKPTSPARGAP-CRSTNEALARRGRHGTTVAYIVXDSGSDHKFP 151
            PRP   +P +        RST  ALA RG H   V     D G   KFP
Sbjct: 1576 PRPESLQPWATRHSVDVARSTGPALASRGTHSAPVFPTNSDQGR-FKFP 1623


>SB_7996| Best HMM Match : efhand (HMM E-Value=1.4)
          Length = 570

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +3

Query: 315 LIVIICVNVSPKYG----SDTLINLGYCLKSLVSTFLQRTPAIRESL 443
           L V ICV +  KYG     D L N G+C     +T  ++  A+ + +
Sbjct: 390 LQVSICVTLDHKYGLRDLIDLLSNFGFCASYFEATLYKKNAAVTQGV 436


>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3373

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 8   PRPSDPKPTSPARG 49
           PRP+ PKPT+P +G
Sbjct: 338 PRPTPPKPTAPPKG 351


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 8    PRPSDPKPTSPARG 49
            PRP+ PKPT+P +G
Sbjct: 3239 PRPTPPKPTAPPKG 3252


>SB_19811| Best HMM Match : RVT_1 (HMM E-Value=3.5e-32)
          Length = 670

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +2

Query: 281 VTV*GFRCXFYSNRHY---MCKCISKIRQRYIN*-SRLLSQVSGVNVSPKNTGDTRIVIN 448
           VTV G +  +  NR       K ++ +RQ+ I+  S      SG+ ++PK  GD RI ++
Sbjct: 281 VTVVGDKAPWLENRRLDKVKEKLLAMVRQKVISPVSEPTDWCSGMVIAPKRNGDVRICVD 340


>SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)
          Length = 412

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 8   PRPSDPKPTSPARGAPCR 61
           PRPS PKPT P     CR
Sbjct: 299 PRPSRPKPTLPPFAEKCR 316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,127,243
Number of Sequences: 59808
Number of extensions: 268853
Number of successful extensions: 1121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)