Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0136
         (557 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2516|AAF48692.1| 1430|Drosophila melanogaster CG8945-PC...    28   7.4  
U51585-1|AAB09760.1|  877|Drosophila melanogaster Broad-Complex ...    28   9.8  

>AE014298-2516|AAF48692.1| 1430|Drosophila melanogaster CG8945-PC
            protein.
          Length = 1430

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 551  SNESPHQNPRLSWNRTHNNETI*KY 477
            S   P   P ++WNR HN++ I KY
Sbjct: 1074 SKPRPTAPPPMTWNRYHNHDEIVKY 1098


>U51585-1|AAB09760.1|  877|Drosophila melanogaster Broad-Complex
           protein isoform Z4 protein.
          Length = 877

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 5   LPRPSDPKPTSPARGAPCRSTNEALARRGRHGTTVA 112
           +PRP  P PT+ ARG+   + N + +  G   +T++
Sbjct: 537 VPRPRPPPPTTSARGSAKENANGSGSASGNARSTMS 572


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,729,154
Number of Sequences: 53049
Number of extensions: 380595
Number of successful extensions: 927
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2151905496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)