Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0136
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.1  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   6.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   6.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   6.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.4  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   8.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.4  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 554 LSNESPHQNPRLSWNRTHNNETI*KYCA*INYNNH 450
           LSN++ H N    +N  +NN     Y    NYNN+
Sbjct: 318 LSNKTIHNNNNYKYNYNNNNYNNNNYNN--NYNNN 350


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 63  DRQGAPRAGEVGFGSEGL 10
           D  G P   E+GF +EGL
Sbjct: 206 DHYGVPTLEELGFDTEGL 223


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 554 LSNESPHQNPRLSWNRTHNN 495
           LSN++ H N    +N  +NN
Sbjct: 85  LSNKTIHNNNNYKYNYNNNN 104


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 554 LSNESPHQNPRLSWNRTHNN 495
           LSN++ H N    +N  +NN
Sbjct: 85  LSNKTIHNNNNYKYNYNNNN 104


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 554 LSNESPHQNPRLSWNRTHNN 495
           LSN++ H N    +N  +NN
Sbjct: 85  LSNKTIHNNNNYKYNYNNNN 104


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 297 LGVXFILIVIICVNVSPKYGSDTLINLGYCLKSLVSTFLQRTPAI 431
           LG+  +L +++ + +  K    T + L    K L+ TF+  T +I
Sbjct: 267 LGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSI 311


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 554 LSNESPHQNPRLSWNRTHNN 495
           LSN + H N    +N  +NN
Sbjct: 85  LSNRTIHNNNNYKYNYNNNN 104


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 294  ALGVXFILIVIICVNVSPKYGSD 362
            A+ V  + +++ICV     +GSD
Sbjct: 1594 AILVIIVAVIVICVLRGKGHGSD 1616


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,928
Number of Sequences: 438
Number of extensions: 2848
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)