Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0136
         (557 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g06860.1 68415.m00768 Ulp1 protease family protein contains P...    30   0.91 
At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein co...    27   6.4  
At2g16990.1 68415.m01959 expressed protein                             27   6.4  
At3g24065.1 68416.m03022 expressed protein ; expression supporte...    27   8.5  
At2g16970.1 68415.m01955 expressed protein  ; expression support...    27   8.5  

>At2g06860.1 68415.m00768 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 938

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +2

Query: 383 LSQVSGVNVSPKNTGDTRIVINYDYYN*FKHSTFKSFRYCGCDSMINVD 529
           +S V+G   SPK +GD   V  Y YY    H TF   + C   +  NVD
Sbjct: 483 ISSVTGAVTSPKLSGDNEEVSCYPYYQ--NHYTFIVVQ-CSQQTTTNVD 528


>At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 695

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 328 YV*MYLQNTAAIH*LI*VIVSSLWCQRFSKEHRRYANRYQ 447
           Y+   ++ +A IH     ++   WC+R S E R Y   YQ
Sbjct: 537 YIVQKIKGSAEIH----EVMGDTWCRRRSSELRNYHKNYQ 572


>At2g16990.1 68415.m01959 expressed protein
          Length = 456

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 279 GLLSKALGVXFILIVIICVNVSPKYGSDTLINLGYCL 389
           G    A+G+  ++++ +  N+S +YG  T++ L  CL
Sbjct: 53  GFQQVAIGMGTMIMMPVIGNLSDRYGIKTILTLPMCL 89


>At3g24065.1 68416.m03022 expressed protein ; expression supported
           by MPSS
          Length = 135

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/64 (25%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
 Frame = -2

Query: 373 LINVSLPYFGD-TFTH-IMTIRIKXTPKALDSNPYYWKCFTSLI*K*NGVSMTAKSYISK 200
           L++++L +    +FT  + T+++     ALDS+P+  +C +S +   + V    ++Y+  
Sbjct: 11  LVSLALAFTSSLSFTAPVFTVKVTNN-LALDSHPFTIRCTSSKLDTSSQVLFRGETYVLM 69

Query: 199 YDTE 188
           +DT+
Sbjct: 70  FDTD 73


>At2g16970.1 68415.m01955 expressed protein  ; expression supported
           by MPSS
          Length = 414

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 279 GLLSKALGVXFILIVIICVNVSPKYGSDTLINLGYCLKSLVSTFL 413
           G+    +G+  ++++ +  N+S +YG  TL+ L  CL  L    L
Sbjct: 54  GVEQVTVGLGTMVMMPVIGNLSDRYGIKTLLTLPMCLSILPPAIL 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,526,967
Number of Sequences: 28952
Number of extensions: 182724
Number of successful extensions: 403
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)