Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0134
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c...    27   2.1  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    27   3.7  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    25   8.5  

>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 233 VYNMRYCPYAQRTILALNAKQIDYEVVNIDLID 331
           V+   YCPY   T   +  K+I  +V  IDL++
Sbjct: 19  VFAKSYCPYCHATEKVIADKKIKAQVYQIDLMN 51


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 95  VLEYVLPYTGVPFRNMSAIKDSRNINFNTKHLRKGDPLPPFNGKL 229
           +L+Y++PY+ +PF  + A+    + NF  K+L +       NGK+
Sbjct: 312 LLDYLIPYSALPFSKI-AVDFHIDENFIEKNLLEIIEAKKLNGKV 355


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 43  GHAPNIFVVSRCSSYQSSIRIRL 111
           GH  N+ V++ C SY+ + RI+L
Sbjct: 365 GHESNVPVIACCESYKFTERIQL 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,788
Number of Sequences: 5004
Number of extensions: 53916
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)