Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0134
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0591 - 9682476-9682487,9682805-9682885,9683085-9683192,968... 48 6e-06
03_02_0592 - 9687700-9687933,9688515-9688591,9688891-9688999,968... 44 2e-04
06_01_0897 - 6903294-6903401,6903781-6903855,6904239-6904379,690... 40 0.003
01_06_0341 - 28560046-28560423,28560540-28560881 36 0.033
10_08_0702 + 19978917-19979243,19979350-19979724 34 0.10
10_08_0721 - 20103490-20103867,20103892-20104284 33 0.18
10_08_0708 + 20040482-20040808,20040906-20041280 33 0.24
10_08_0709 + 20055748-20056077,20056169-20056534 31 0.72
10_08_0720 - 20100406-20100798,20100917-20101249 31 1.3
10_08_0705 + 20032111-20032437,20032525-20032896 31 1.3
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 31 1.3
10_08_0723 + 20111974-20112705 30 1.7
10_08_0706 + 20034534-20034860,20034988-20035368 30 1.7
01_05_0336 - 21111048-21111800 30 1.7
10_08_0719 + 20097639-20097968,20098048-20098410 30 2.2
10_08_0707 + 20037301-20037633,20037862-20038248 30 2.2
03_05_0923 + 28848925-28849272,28849636-28849869,28849965-288501... 30 2.2
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 29 2.9
10_08_0711 + 20073470-20073799,20073882-20074274 29 2.9
01_07_0184 + 41846416-41847132 29 2.9
12_02_1267 - 27448871-27450445 29 3.8
07_01_0670 + 5030971-5032698 29 3.8
12_02_0122 + 13923510-13925081 29 5.1
10_08_0692 + 19918746-19919072,19919419-19919781,19919841-199199... 29 5.1
10_08_0710 + 20070655-20070990,20071074-20071469 28 8.8
>03_02_0591 -
9682476-9682487,9682805-9682885,9683085-9683192,
9683307-9683383,9683495-9683603,9683696-9683794,
9684208-9684294,9684454-9684514,9684646-9684720,
9684826-9684854
Length = 245
Score = 48.4 bits (110), Expect = 6e-06
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +2
Query: 200 DPLPPFNGKLRVYNMRYCPYAQRTILALNAK--QIDYEVVNIDLIDKPEWLTTK 355
+P P F+G R+Y +CPYAQR +A N K Q ++V IDL D+P W K
Sbjct: 25 EPPPLFDGTTRLYVAYHCPYAQRAWIARNYKGLQDKIKIVAIDLADRPAWYKEK 78
>03_02_0592 -
9687700-9687933,9688515-9688591,9688891-9688999,
9689162-9689260,9689368-9689454,9689570-9689630,
9689739-9689813,9689936-9689961
Length = 255
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = +2
Query: 209 PP--FNGKLRVYNMRYCPYAQRTILALNAK--QIDYEVVNIDLIDKPEWLTTK 355
PP F+G R+Y +CP+AQR + N K Q E+V IDL DKP W K
Sbjct: 25 PPRLFDGTTRLYICYFCPFAQRAWIIRNFKGLQDKIELVGIDLQDKPAWYKEK 77
>06_01_0897 -
6903294-6903401,6903781-6903855,6904239-6904379,
6904496-6904646,6905035-6905178,6905276-6905366,
6906071-6906308
Length = 315
Score = 39.5 bits (88), Expect = 0.003
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 251 CPYAQRTILALNAKQIDYEVVNIDLIDKPEWLTTKSAFG 367
CP+ QR +L + K + Y++ +DL +KP+W S G
Sbjct: 80 CPFTQRVLLTIEEKHLPYDIKLVDLANKPDWFLKISPEG 118
>01_06_0341 - 28560046-28560423,28560540-28560881
Length = 239
Score = 35.9 bits (79), Expect = 0.033
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +2
Query: 221 GKLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPEWL 346
G+L++ Y PYA R +AL K + YE + DL K E L
Sbjct: 11 GELQLLGTWYSPYAMRAKIALGLKGLSYEYIEQDLFGKSELL 52
>10_08_0702 + 19978917-19979243,19979350-19979724
Length = 233
Score = 34.3 bits (75), Expect = 0.10
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 224 KLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPEWLTTKS 358
+L++ M PY R LAL+ K +DYE V DL +K E L + +
Sbjct: 7 ELKLLGMWASPYVLRVKLALSLKGLDYEYVEEDLKNKSELLLSSN 51
>10_08_0721 - 20103490-20103867,20103892-20104284
Length = 256
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 227 LRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPEWLTTKS 358
++V + P+A R +ALN K + YE V D+ +K E L T +
Sbjct: 8 VKVLGVVVSPFAIRVRIALNIKGVSYEYVEEDIFNKSELLLTSN 51
>10_08_0708 + 20040482-20040808,20040906-20041280
Length = 233
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 224 KLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPEWLTTKS 358
+L++ M P+A R LAL+ K + YE V DL +K E L T +
Sbjct: 7 ELKLLGMWASPFALRAKLALSFKGLSYEYVEEDLKNKSELLLTSN 51
>10_08_0709 + 20055748-20056077,20056169-20056534
Length = 231
Score = 31.5 bits (68), Expect = 0.72
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 224 KLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPEWL 346
+L++ + PY R LAL+ K + YE V DL +K E L
Sbjct: 8 QLKLLGLWVSPYTHRVKLALSFKGLSYEYVEEDLSNKSELL 48
>10_08_0720 - 20100406-20100798,20100917-20101249
Length = 241
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 227 LRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPEWLTTKS 358
++V + P+A R +AL K + YE + DL +K E L + +
Sbjct: 8 VKVLGLVMSPFAIRVCIALKLKGVSYEYIEEDLANKSELLLSSN 51
>10_08_0705 + 20032111-20032437,20032525-20032896
Length = 232
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 224 KLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPEWLTTKS 358
+L++ M PY R AL+ K + YE V DL++K + L + +
Sbjct: 7 ELKLLGMWASPYVLRVKFALSLKGLSYEYVEEDLMNKSDLLLSSN 51
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 224 KLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDL 325
KLRVY M R LN K +D+++V +DL
Sbjct: 7 KLRVYGMALSANVVRVATVLNEKGLDFDLVPVDL 40
>10_08_0723 + 20111974-20112705
Length = 243
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 224 KLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPEWL 346
+L++ + PY R + LN K + YE V DL++K + L
Sbjct: 10 ELKLLGVWDSPYVNRVQIVLNLKGLSYEYVEEDLMNKSDLL 50
>10_08_0706 + 20034534-20034860,20034988-20035368
Length = 235
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 224 KLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPEWLTTKS 358
+L++ M P+A R LAL+ K + YE DL +K E L + +
Sbjct: 7 ELKLLGMWTSPFALRVKLALSFKGLSYEYAEEDLSNKSELLLSSN 51
>01_05_0336 - 21111048-21111800
Length = 250
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 254 PYAQRTILALNAKQIDYEVVNIDLIDKPEWL 346
P+ R LALN K + YE V +DL K + L
Sbjct: 24 PFLVRVRLALNLKGLSYEYVEVDLAGKSDLL 54
>10_08_0719 + 20097639-20097968,20098048-20098410
Length = 230
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 218 NGKLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPEWLTTKS 358
N +L++ P+ R LAL K + YE V D+ DK E L +
Sbjct: 6 NHELKLLGTWPSPFVVRVRLALGLKGLSYEYVEQDIRDKSELLVVSN 52
>10_08_0707 + 20037301-20037633,20037862-20038248
Length = 239
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 254 PYAQRTILALNAKQIDYEVVNIDLIDKPEWL 346
P+ R LAL K + YE V DL++K E L
Sbjct: 17 PFVTRVELALGLKGLSYEYVKQDLVNKSELL 47
>03_05_0923 +
28848925-28849272,28849636-28849869,28849965-28850131,
28850433-28850651,28850743-28850929,28851012-28851063,
28851158-28851387,28851619-28851717,28851835-28852565,
28853004-28853519,28854140-28854398
Length = 1013
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 2 RNCNKNMITSTVSLAMHLIYSSFQGVRVI 88
R C+KN I+ + ++A+H + SSF+G+ +
Sbjct: 682 RRCDKNAISDSKTVALHPLPSSFKGLSAL 710
>11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,
4004474-4004556,4004661-4004775,4005309-4005400,
4005558-4005612,4005689-4005834,4005888-4006001,
4006149-4006342,4006985-4007112,4008526-4008583,
4009800-4009876,4010214-4010263,4010336-4010515,
4010633-4010731,4010816-4011133,4011221-4011281,
4011693-4012781,4012951-4013005,4013133-4013291,
4013923-4014442
Length = 1406
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 11 NKNMITSTVSLAMHLIYSSFQGVRVISQVLEYVLPYTGVPF--RNMSAIKDSRNINFNTK 184
+KN++ ++ + + ++S F G V V YV T VP R KD+RN+N++ K
Sbjct: 828 SKNVLVPSLPIKKYPVHSFFSGDYVAMDVSGYV-SITFVPALPRTSEFHKDARNVNWHQK 886
>10_08_0711 + 20073470-20073799,20073882-20074274
Length = 240
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 224 KLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPE 340
+L++ M PY R LAL K + YE + DL +K +
Sbjct: 8 ELKLLGMWASPYVSRAKLALQLKGVSYEYIEEDLGNKSD 46
>01_07_0184 + 41846416-41847132
Length = 238
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 254 PYAQRTILALNAKQIDYEVVNIDLIDKPEWLTT 352
PY+QR AL K + YE++ DL +K + L T
Sbjct: 18 PYSQRAEAALRLKGVPYELILEDLRNKSDLLLT 50
>12_02_1267 - 27448871-27450445
Length = 524
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +2
Query: 143 SAIKDSRNINFNTKHLRKGDPLPPFNGKLRVY-NMRYCPYAQRTILALNAKQIDYEVVNI 319
SA R I F T H K DP G++ V+ M YC + +LA N ++ + +
Sbjct: 360 SACGGERIIIFTTNHKEKLDPALIRRGRMDVHIEMSYCRFEAFKVLAKNYLGVEQHEMFV 419
Query: 320 DL 325
++
Sbjct: 420 EI 421
>07_01_0670 + 5030971-5032698
Length = 575
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 143 SAIKDSRNINFNTKHLRKGDPLPPFNGKLRVY-NMRYCPYAQRTILALNAKQID 301
SA R + F T HL K DP G++ ++ M YC + LA N +D
Sbjct: 379 SACGGERIVVFTTNHLDKLDPALIRRGRMDMHIEMSYCGFEAFKTLAKNYLDVD 432
>12_02_0122 + 13923510-13925081
Length = 523
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 143 SAIKDSRNINFNTKHLRKGDPLPPFNGKLRVY-NMRYCPYAQRTILALN 286
SA R I F T H K DP G++ V+ M YC + +LA N
Sbjct: 365 SACGGERIIIFTTNHKEKLDPALIRRGRMDVHIEMSYCGFEAFKVLASN 413
>10_08_0692 +
19918746-19919072,19919419-19919781,19919841-19919977,
19920298-19920304
Length = 277
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 224 KLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPEWLTTKS 358
+L++ M P+A R LAL+ K + Y+ V D +K E L + +
Sbjct: 7 ELKLLGMWASPFALRAKLALSFKGLSYDYVEEDFKNKSELLLSSN 51
>10_08_0710 + 20070655-20070990,20071074-20071469
Length = 243
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 224 KLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPEWLTTKS 358
+L++ + PY R AL+ K + YE V DL +K E L + +
Sbjct: 10 ELKLLGLWASPYVLRAKFALSFKGLSYENVEEDLHNKSELLLSSN 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,326,533
Number of Sequences: 37544
Number of extensions: 288943
Number of successful extensions: 529
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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