Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0134
(734 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14) 75 5e-14
SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 3e-11
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26) 39 0.004
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05) 29 3.0
SB_35487| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_14676| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_59670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20) 28 9.0
>SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14)
Length = 238
Score = 75.4 bits (177), Expect = 5e-14
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = +2
Query: 185 HLRKGDPLPPFNGKLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPEW 343
HL GDP PP KLR+Y+MR+CPYA+R L L AK +DYE +NI+L +KP+W
Sbjct: 5 HLSNGDPRPPPGDKLRLYSMRFCPYAERPRLVLAAKGVDYECININLKNKPDW 57
>SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 66.1 bits (154), Expect = 3e-11
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Frame = +2
Query: 164 NINFNTKHLRKGD--PLPPFNGKLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKP 337
+I H+ KG P P N KLR+Y+MR+CP+A+R L L AK +DYE VN++L KP
Sbjct: 8 SITMPVTHISKGSSRPAKPQN-KLRLYSMRFCPFAERPRLVLAAKGLDYECVNVNLKSKP 66
Query: 338 EWLTT 352
EW T
Sbjct: 67 EWFQT 71
>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
Length = 492
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Frame = +2
Query: 230 RVYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDK-PEWL 346
++YN +CP+AQR +A+ AK+ ++E + + +K PEWL
Sbjct: 263 KLYNAWFCPFAQRAWIAMLAKKAEFEYIEQNPYNKTPEWL 302
>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 236 YNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPEWLTTKSAFGMC*CINIILAKC 403
Y M+YCP T+ A A D+ D D E+ G C ++I+ KC
Sbjct: 971 YGMKYCPTTHYTVFARVASYTDWIKRMTDCRDTGEYCDYHVPRGDCERMDIVRRKC 1026
>SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05)
Length = 430
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +2
Query: 89 SQVLEYVLPYTGVPFRNMSAIKDSRNINFNTKHLRKGDPLPPFNGKLRVYNMRYCP 256
+Q +++ LP TG+ ++ S I D ++ +R+ DPL F G ++ CP
Sbjct: 66 AQKMKFSLP-TGIVEQSASNIHDIKSSKSQNDKMRQDDPLCKFCGLRHSFSQGKCP 120
>SB_35487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 59 YSSFQGVRVISQVLEYVLPYTG-VPFRNMSAIKDSRNINFNTKHLRKGDPLPPFNGKLRV 235
Y S+ G+R + YV T VP+ +R +++ +++ G P+ + +
Sbjct: 72 YVSY-GIRYVPYGTRYVSYGTRYVPYGIRYVPYGTRYVSYGIRYVPYGTCYVPYGTRYVL 130
Query: 236 YNMRYCPYAQRTI 274
Y +RY PY R +
Sbjct: 131 YGIRYVPYGTRYV 143
>SB_14676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 905
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +2
Query: 89 SQVLEYVLPYTGVPFRNMSAIKDSRNINFNTKHLRKGDPLPPFNGKLRVYNMRYCP 256
+Q +++ LP TG+ ++ S I D ++ +R+ DPL F G ++ CP
Sbjct: 176 TQKMKFSLP-TGIVEQSASNIYDIKSSKSQNNKVRQDDPLCKFCGLKHSFSKGKCP 230
>SB_59670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +2
Query: 173 FNTKHLRKGDPLPPFNGKLRVYNMRYCPYAQRTILALNAKQIDYEVV---NIDLIDKPEW 343
FN ++ ++G+ + FN K+ + + + + T L +D EV+ N+DLID PE
Sbjct: 166 FNQRNQKEGERMDNFNRKIDLLYL--VVHGEFTPLLSCEACLDLEVLKFMNLDLIDTPER 223
Query: 344 LTTKSAFG 367
L ++ G
Sbjct: 224 LAEETTQG 231
>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
Length = 1037
Score = 27.9 bits (59), Expect = 9.0
Identities = 7/38 (18%), Positives = 20/38 (52%)
Frame = +2
Query: 218 NGKLRVYNMRYCPYAQRTILALNAKQIDYEVVNIDLID 331
N + +++ +CP+ ++ + + Y + +DL+D
Sbjct: 576 NNAVMIFSKSFCPFCKKVKAIFESINVQYTAMELDLVD 613
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,263,282
Number of Sequences: 59808
Number of extensions: 371670
Number of successful extensions: 706
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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