Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0133
         (776 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    23   3.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.8  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   8.3  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +1

Query: 187 FYAEQSKRQEILVKLEVDKKLTENILFDENWQLSQ 291
           F A  +K+  + +++++DK+   N +     +LSQ
Sbjct: 368 FSANSTKKLIVKIRIDIDKEDERNEIISSALKLSQ 402



 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 193 AEQSKRQEILVKLEVDKKLTENILFDENWQLSQ 291
           A  +K+  + +K+++DK+   N +     +LSQ
Sbjct: 317 ANSTKKLIVKIKIDIDKEDERNEVISSALKLSQ 349


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
 Frame = +1

Query: 43   WV*RCEKDFRCTKTRYLI*ESIATSSCAMEADEDVPTLSAE-TFAALQ--EFYAEQSKRQ 213
            WV   ++ F+     YL+  +++ S   ++A  DVP L+    + A+   +F+ +  K+ 
Sbjct: 1543 WVTELKQAFK--PKGYLLSAAVSPSKTVIDAGYDVPVLAQNLDWVAVMTYDFHGQWDKQT 1600

Query: 214  EILVKLEVDKKLTENILFDENWQLSQFWYDE 306
              +  L    +  E + ++ N+ ++ +W  E
Sbjct: 1601 GHVAPLYYHPE-DEVVFYNANFSIN-YWISE 1629


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 663 YYILHYGTGA*NYFIFRKQF 604
           YY+    TG   Y IF+K F
Sbjct: 66  YYLPAMSTGPLKYAIFQKNF 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,394
Number of Sequences: 336
Number of extensions: 4353
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)