Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0133
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomy...    30   0.32 
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      28   1.7  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   3.0  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   4.0  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    26   5.2  
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    26   5.2  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.2  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   6.9  
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos...    26   6.9  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   6.9  
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    26   6.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   9.2  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    25   9.2  
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    25   9.2  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    25   9.2  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    25   9.2  

>SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 565 LSEECITKTSETIKLLSKNKI-ILCTGTIMKDIVK 666
           + E+C+TK+  T+ L  KNK+ +  T  ++K +V+
Sbjct: 231 VDEDCVTKSLHTLYLFQKNKVSVANTNELLKSLVQ 265


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 82  FWCTESLFHTSKPICCTLDQITI 14
           F C E  FHTS+ +  T D+IT+
Sbjct: 320 FLCVEEPFHTSRNLANTADEITM 342


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/52 (26%), Positives = 30/52 (57%)
 Frame = +1

Query: 526 HHSYDLVVADPPFLSEECITKTSETIKLLSKNKIILCTGTIMKDIVKELLDL 681
           H ++D+ V D     +  +++  + +  L+ N  +L TGT +++ +KEL+ L
Sbjct: 672 HQNFDVCVYDEGHYLKNRMSERYKHLMNLNANFRLLLTGTPLQNNLKELVSL 723


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/52 (23%), Positives = 33/52 (63%)
 Frame = -1

Query: 371 SATLPLSSNTLSITLTRECTVFSSYQN*LSCQFSSNKIFSVNFLSTSSFTRI 216
           SAT  ++ +++S +++ + ++ SSY + +S    ++    ++ +++SS+T I
Sbjct: 785 SATPTITQSSISTSVSSQSSMNSSYSSPISSNSVTSSTSIISSIASSSYTSI 836


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 553 RQLLSHMSDVRQVVPP*DCYNRRICSQDRELQ 458
           + + +H   + +V    D YN   CS+DRE++
Sbjct: 612 KSIFAHQDSIMEVTFQPDTYNFFTCSKDREVR 643


>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 710 RCFGWNSHNFKSSNSFTISFIMVP 639
           RC G+N+ N K+++ + I+ + VP
Sbjct: 75  RCGGYNNVNLKAASEYKITVVHVP 98


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 202 SKRQEILVKLEVDKKLTE-NILFDENWQLSQFWYDEKTVHSLVKVIDKVLDDRG 360
           S+R+E+ +K     KL + NI+FD N   S     E    +L+++ID V ++RG
Sbjct: 217 SEREELFIK-----KLEQCNIIFDFNDPSSDLASKEIKREALLQMIDYVSENRG 265


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = -1

Query: 773  QFKTLSKSKLA*HENSLVKLFRCFGWNSHNFKSSNSFTISFIMVPVHKIILFFESNLIVS 594
            QF  L ++     E  +  L RC  W S   KS ++F  +F    + K++   ES+ +++
Sbjct: 1667 QFSALRRA-CGCEETFVTSLARCSLWESSGGKSGSAFLKTFDKKYILKVLSRLESDSLLN 1725


>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
           Mms2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 8/14 (57%), Positives = 14/14 (100%)
 Frame = +3

Query: 69  SVHQNKIFNLRINC 110
           SVH+N+I++L+I+C
Sbjct: 51  SVHENRIYSLKIHC 64


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = +1

Query: 280 QLSQFWYDEKTVHSLVKVIDKVLDDRGK 363
           ++++  YD+  +  ++ +ID+ L+D+GK
Sbjct: 44  EIAELTYDQNEMLEVMDIIDRRLNDKGK 71


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 85  LFWCTESLFHTSKPICCTLDQITIIHYK 2
           + W   ++FH+  P+  T D +   HYK
Sbjct: 85  VLWVNSAVFHSFGPVVNTPDDVWNSHYK 112


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = -1

Query: 476 SGP*TS-NRLSYSSRVTVPLSPICLFKGTKSVGHEISATLPLSSNTLSITLTRECTVFSS 300
           S P TS N  + +S  + PLS +     T +     +++ PLSS   +   +   T  +S
Sbjct: 305 STPLTSVNSTTTTSASSTPLSSVSSANSTTATS---TSSTPLSSVNSTTATSASSTPLTS 361

Query: 299 YQN*LSCQFSSNKIFSVNFLSTSS 228
             +  +   SS  + SVN  S +S
Sbjct: 362 VNSTTATSASSTPLTSVNSTSATS 385


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 332 TLTRECTVFSSYQN*LSCQFSSNKIFSVNFLSTSSF 225
           T+T  C VF    N L+C+  +  +F +   S   F
Sbjct: 792 TMTFTCFVFFDMFNALACRSETKSVFKLGIFSNRMF 827


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +1

Query: 406 RQIGDRGTVTLLEYDRRFEVHGPDYIFYDYNNPKEVPPDVHHSYDLVVADP 558
           R +G        +Y R F+   PD +   YN+P  +   V+     V+ +P
Sbjct: 181 RSLGSLSITANPKYKRGFQPLLPDVVQAVYNDPASIEQFVNDKTAAVIVEP 231


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 559 PFLSEECITKTSETIKLLSKNKIILCTGTIMKDIVKELLDLKLCEFQPKHR 711
           P L + CI++    I+    N +I+C GT +       L  +L +  P  R
Sbjct: 328 PQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGSR 378


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
 Frame = +1

Query: 187 FYAEQSKRQEILVKLEVDKKLTENILFDENWQLSQFWYDEKTVHSLVKVIDKVLDDRGKV 366
           F   +++ +  L K+E + K T  +L D N    Q++Y+ +  +       KVLD    +
Sbjct: 224 FLETRAEYELYLSKME-EAKSTIYLLLDRNPDNHQYYYNLQRAYGYEDASGKVLDSAEWL 282

Query: 367 ALIS----------CPTLFVPLKRQIGDRGTVTLLEYDRRFEVHGPDYIFYD 492
            L S          CPT  +PL++  GD     +  Y R+    G   +F D
Sbjct: 283 NLYSQLAKRYPKSECPTR-LPLEKLEGDEFLTHVDLYLRKKLKRGIPSVFVD 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,849
Number of Sequences: 5004
Number of extensions: 68330
Number of successful extensions: 218
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)