Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0133
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1140 + 30699054-30699533,30699627-30699708,30700265-30700428    161   4e-40
11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142     31   1.3  
01_06_0006 - 25517892-25517935,25518156-25518276,25518598-255187...    29   3.1  
04_04_0217 - 23693124-23693535,23693965-23694052,23694428-236945...    28   7.2  
04_01_0063 - 630345-633743                                             28   7.2  
02_04_0597 - 24198112-24198462,24199249-24199389,24200322-242005...    28   7.2  
06_01_1014 - 7936514-7936530,7936768-7936859,7937290-7937581,793...    28   9.5  

>03_05_1140 + 30699054-30699533,30699627-30699708,30700265-30700428
          Length = 241

 Score =  161 bits (392), Expect = 4e-40
 Identities = 86/214 (40%), Positives = 130/214 (60%), Gaps = 8/214 (3%)
 Frame = +1

Query: 136 DEDVPTLSAETFAALQEFYAEQSKRQEILVKLEVDKKLTENILFDENWQLSQFWYDEKTV 315
           ++D P LSA    AL+EF  EQ +        E ++      L  E+W+LSQFWYDE+T 
Sbjct: 17  EDDRPQLSAAAAEALREFLLEQGRDGGE----EGEEGGGGVELVAEDWRLSQFWYDERTA 72

Query: 316 HSLVKVIDKVLDDRGK-----VALISCPTLFVPLKRQIGDRGTVTLLEYDRRFEVHGPDY 480
            +L + + +++   G      VA ++CPTL+  LK    D  T  LLEYD RF  +G D+
Sbjct: 73  RALAEEVARLVSLSGPASSAAVACVACPTLYTYLKTSSPDV-TAQLLEYDVRFGQYGGDF 131

Query: 481 IFYDYNNPKEVPPDVHHSYDLVVADPPFLSEECITKTSETIKLLSKNK---IILCTGTIM 651
            FYDYN P+E+P  + H+Y +VVADPP+LS+EC+ K ++T+  L+  +   ++L TG + 
Sbjct: 132 TFYDYNQPEELPAAMKHAYRIVVADPPYLSKECLEKVAKTVSFLAHPEGSFLLLLTGEVQ 191

Query: 652 KDIVKELLDLKLCEFQPKHRNNLTNEFSCYANFD 753
           +D   ELL+++ C F+P+H N L NEF  + N+D
Sbjct: 192 RDRAFELLNVRPCGFKPQHSNKLGNEFRLFTNYD 225


>11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142
          Length = 751

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 426 PSVSDLSFQGHKECGARNQC 367
           PS SDLS +G  ECG+ N C
Sbjct: 507 PSTSDLSTRGSVECGSMNSC 526


>01_06_0006 -
           25517892-25517935,25518156-25518276,25518598-25518733,
           25519189-25519280,25519358-25519426,25519710-25519821,
           25519897-25520015,25520302-25520355,25520811-25520891,
           25520968-25521051,25521124-25521315,25521633-25521746,
           25521832-25521978,25522066-25522302,25522762-25522810,
           25522894-25523027,25523124-25523324,25523532-25523701,
           25523773-25523875,25524198-25524361,25525015-25525055,
           25525144-25525187
          Length = 835

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 532 SYDLVVADPPFLSEECITKTSETIKLLSKNKIILCTGTIMKDIVKELLDL-KLC 690
           S+D V+ D   + +   TK +  +K LS+ + ++ TGT +++ + E   L  LC
Sbjct: 337 SWDYVILDEGHVLKNPNTKNAAALKSLSRGQTVVLTGTPVQNNLSEFHSLMSLC 390


>04_04_0217 -
           23693124-23693535,23693965-23694052,23694428-23694503,
           23694729-23694787,23694853-23694934,23695533-23696577,
           23696700-23696998
          Length = 686

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 145 VPTLSAETF---AALQEFYAEQSKRQEILVKLEVDKKLTENI 261
           +PT   E F   AAL EF  E    Q +L K + +KKL + I
Sbjct: 57  LPTRDQEQFDKTAALTEFLQEHRLEQTVLFKRKKEKKLEQTI 98


>04_01_0063 - 630345-633743
          Length = 1132

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = +1

Query: 463 VHGPDYIFYDYNNPKEVPPDVHHSYDLVVADPPFLSEECITKTSETIKLLSKNKIILCTG 642
           V G D    +  + KE+PPDV H +        F  + C  K   T+ L++    +  T 
Sbjct: 477 VAGTDCFRVESGDMKEIPPDVRHLFIRSNDQTKFAEKICKLKKLRTLILITTFGGLGITI 536

Query: 643 TIMKDIVKELLDLKL 687
             ++ ++K+L  L++
Sbjct: 537 EELEAMLKKLKKLRV 551


>02_04_0597 - 24198112-24198462,24199249-24199389,24200322-24200537,
            24200626-24201561,24201655-24201816,24202026-24202304,
            24202399-24203171,24206142-24207363
          Length = 1359

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 199  QSKRQEILVKLEVDKKLTENILFDENWQLSQF 294
            +S++ E +VKL  DKK   + L +   QLSQF
Sbjct: 1156 RSEKDEQIVKLTADKKNLHDRLHEAETQLSQF 1187


>06_01_1014 -
           7936514-7936530,7936768-7936859,7937290-7937581,
           7937690-7937759,7938131-7938223
          Length = 187

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 168 CLC*QCGHVFICFHCTRR 115
           C    CGH F CF C RR
Sbjct: 135 CFFIPCGHGFACFTCARR 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,431,262
Number of Sequences: 37544
Number of extensions: 384985
Number of successful extensions: 925
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)