Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0133
         (776 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              32   0.45 
SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)                      29   3.2  
SB_34669| Best HMM Match : DUF572 (HMM E-Value=1.6e-39)                29   5.5  
SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7)             28   7.3  
SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)                    28   7.3  
SB_58977| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  
SB_27224| Best HMM Match : RNase_P_p30 (HMM E-Value=5.9)               28   9.7  

>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 19/83 (22%), Positives = 39/83 (46%)
 Frame = +1

Query: 352 DRGKVALISCPTLFVPLKRQIGDRGTVTLLEYDRRFEVHGPDYIFYDYNNPKEVPPDVHH 531
           DR  V +++ P +      +I DR  V + + D  + +H P  +++  +     PP V+H
Sbjct: 531 DRKNVIVVNRPPMIYHPPPEIYDRPDVVVHQPD--YVIHRPSVVYHQPSVVVHRPPIVYH 588

Query: 532 SYDLVVADPPFLSEECITKTSET 600
              +V   PP +  + +  + +T
Sbjct: 589 QPPVVFHQPPPMVRQPVMHSHDT 611



 Score = 29.5 bits (63), Expect = 3.2
 Identities = 22/95 (23%), Positives = 40/95 (42%)
 Frame = +1

Query: 316 HSLVKVIDKVLDDRGKVALISCPTLFVPLKRQIGDRGTVTLLEYDRRFEVHGPDYIFYDY 495
           +S  K  DK   D+    ++  P +      +I DR  V +   D    VH P  +++  
Sbjct: 680 NSTAKKSDK--GDKKNTVIVQRPPMIYHPPPEIYDRPDVVVHRPD--LVVHRPSIVYHQP 735

Query: 496 NNPKEVPPDVHHSYDLVVADPPFLSEECITKTSET 600
           +     PP ++H   ++   PP L  + +  + ET
Sbjct: 736 SVVVHRPPIIYHQPPVMFHQPPPLVHQPVLHSHET 770


>SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1154

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 332 TLTRECTVFSSYQN*LSCQFSSNKIFSVNFLSTSSF 225
           T+T  C VF    N LSC+     IF V FL+   F
Sbjct: 853 TMTFTCFVFFDMFNALSCRSQEKSIFQVGFLTNRMF 888


>SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)
          Length = 1705

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +1

Query: 505 KEVPPDVHHSYDLVVADPPFLSEECITKTSETIKLLSKNKIILCTGTIMKDIVKEL 672
           KEV   VH S D++ +   F S E   +   + K   KNK +    T+ K + KE+
Sbjct: 817 KEVDTTVHESRDVLTSSIDFTSAETGVEIEPSKKRKKKNKGLKDDQTVAKIVEKEV 872



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +1

Query: 505 KEVPPDVHHSYDLVVADPPFLSEECITKTSETIKLLSKNKIILCTGTIMKDIVKELLDLK 684
           KEV   V+ S D++ +   F+S E   +   + K   KNK +    T+ K + KE +D  
Sbjct: 551 KEVDTPVYESQDVLTSSIDFISAETGVEIEPSKKRKKKNKGLKDDQTVAKIVGKE-VDTP 609

Query: 685 LCEFQPKHRNN 717
           + E +  H ++
Sbjct: 610 VYESRDVHASS 620


>SB_34669| Best HMM Match : DUF572 (HMM E-Value=1.6e-39)
          Length = 593

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +3

Query: 639 RYHNEGYSKGIARFKIMRIPTK 704
           RYHNEGY +G  R KIM I +K
Sbjct: 394 RYHNEGY-EGHRRRKIMEIKSK 414


>SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7)
          Length = 576

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 412 IGDRGTVTLLEYDRRFEVHGPDYI--FYDYNNPKEVPPDVHHSYDL 543
           +G R  ++L+  D RF+     YI  ++DYN+ K+  P    SY +
Sbjct: 456 VGIRYQLSLMRGDIRFKPDSAKYIPVYFDYNSSKKEVPKFLSSYTI 501


>SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)
          Length = 475

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 484 FYDYNNPKEVPPDVHHSY 537
           F D+  PK+ PP +HHSY
Sbjct: 65  FSDFPIPKDYPPFMHHSY 82


>SB_58977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 124 AMEADEDVPTLSAETFAALQ-EFYAEQSKRQEILVKLEVDKKLTENI 261
           +++AD++      E     Q E  AE+ K+Q IL KLEV K  T N+
Sbjct: 48  SLQADQEKERRRREEQEKKQKEEEAERRKKQAILEKLEVIKMATNNL 94


>SB_27224| Best HMM Match : RNase_P_p30 (HMM E-Value=5.9)
          Length = 489

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -2

Query: 235 LLALQGFLVFYFVQHRIPVMQQMSLLTMWARLHLLPLHKKM*QLILRLNILFWCTESLFH 56
           LL ++  L F     R+     + LLT+   LHLL +HK +  L +R  +       + H
Sbjct: 58  LLTVRKRLTFTHGAQRLTFTHGLHLLTVRKGLHLLTVHKGLHLLTVRKGLHLLTVRKILH 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,424,420
Number of Sequences: 59808
Number of extensions: 494131
Number of successful extensions: 1359
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)