Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0133
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   4.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.5  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   9.7  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   9.7  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   9.7  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   9.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.7  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
 Frame = +1

Query: 430 VTLLEYDRRFEVHGP------DYIFYDYNN 501
           +  + +DR F + G       DY FYDY+N
Sbjct: 7   IKYINFDRFFFIEGMTNVLDFDYYFYDYSN 36


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 472 PDYIFYDYNNPKEVPPDVHHSYDLVVADPPFLS 570
           PDYIF + ++   +PP+   S  L   DP FL+
Sbjct: 50  PDYIFEEGDDYVTLPPEFFDS--LWQPDPYFLN 80


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
 Frame = +1

Query: 322 LVKVIDK--VLDDRGKVALISCPTLFVPLKRQIGDRGTVTLLEYDRRFEVHGPDYIFY-- 489
           L+  ID   ++D+ GK   I  P     L   I         ++   +++   D + Y  
Sbjct: 336 LMDAIDSGYLIDEYGKKIDIYTPEGLNMLGNVIEGNSDSINTKFYGMYDILARDILGYNF 395

Query: 490 DYNNPKEVPPDVHHSYDLVVADPPF 564
           D+ N   + P    SY   + DP F
Sbjct: 396 DFQNKNNLIPSALQSYSTSMRDPAF 420


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 487 YDYNNPKEVPPDVHHSYDLVVADPPF 564
           +D+ N   + P    SY   + DP F
Sbjct: 395 FDFQNKNNLIPSALQSYSTSMRDPAF 420


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 624 NNFMHRYHNEGYSK 665
           NN+ + Y+N  Y+K
Sbjct: 93  NNYKYNYNNNNYNK 106


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 624 NNFMHRYHNEGYSK 665
           NN+ + Y+N  Y+K
Sbjct: 93  NNYKYNYNNNNYNK 106


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 624 NNFMHRYHNEGYSK 665
           NN+ + Y+N  Y+K
Sbjct: 93  NNYKYNYNNNNYNK 106


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 624 NNFMHRYHNEGYSK 665
           NN+ + Y+N  Y+K
Sbjct: 93  NNYKYNYNNNNYNK 106


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 334 IDKVLDDRGKVALISCP 384
           IDK  ++ G  A+++CP
Sbjct: 551 IDKKFNEFGTTAVVNCP 567


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 334 IDKVLDDRGKVALISCP 384
           IDK  ++ G  A+++CP
Sbjct: 551 IDKKFNEFGTTAVVNCP 567


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,335
Number of Sequences: 438
Number of extensions: 5146
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)