Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0133
(776 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g58470.1 68416.m06517 expressed protein several hypothetical ... 151 5e-37
At5g61720.1 68418.m07744 expressed protein predicted protein, Ar... 30 2.0
At2g44800.1 68415.m05575 oxidoreductase, 2OG-Fe(II) oxygenase fa... 30 2.0
At1g61850.1 68414.m06979 patatin family protein similar to membr... 29 2.6
At3g07160.1 68416.m00853 glycosyl transferase family 48 protein ... 29 3.4
At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein ... 28 7.9
At3g60290.1 68416.m06739 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 7.9
At1g55620.2 68414.m06367 voltage-gated chloride channel family p... 28 7.9
At1g55620.1 68414.m06366 voltage-gated chloride channel family p... 28 7.9
At1g32930.1 68414.m04056 galactosyltransferase family protein co... 28 7.9
>At3g58470.1 68416.m06517 expressed protein several hypothetical
proteins - Saccharomyces cerevisiae
Length = 248
Score = 151 bits (366), Expect = 5e-37
Identities = 80/215 (37%), Positives = 130/215 (60%), Gaps = 9/215 (4%)
Frame = +1
Query: 136 DEDVPTLSAETFAALQEFYAEQSKRQEILVKLE--VDKKLTENI-LFDENWQLSQFWYDE 306
D+D LS++ AAL+EF A+Q+K + ++ + L E+W+LSQFWY+
Sbjct: 24 DDDPLVLSSQALAALREFLADQNKTVASTPPASSVAGGEESDKVELVTEDWRLSQFWYEP 83
Query: 307 KTVHSLVKVIDKVLDDR---GKVALISCPTLFVPLKRQIGDRGTVTLLEYDRRFEVHGPD 477
+T ++ + L R +VA I+CPTL+V LK++ V LLEYD RFE +G +
Sbjct: 84 ETAETVADEV-VTLSQRIPGCRVACIACPTLYVYLKKRDPSL-QVQLLEYDMRFERYGKE 141
Query: 478 YIFYDYNNPKEVPPDVHHSYDLVVADPPFLSEECITKTSETIKLLSK---NKIILCTGTI 648
+ FYDYN P+++P + H + ++VADPP+LS EC+ + S+TI L+ + ++L TG +
Sbjct: 142 FTFYDYNEPEDLPLQLKHCFHIIVADPPYLSRECLERVSQTILFLASPVDSLLLLLTGEV 201
Query: 649 MKDIVKELLDLKLCEFQPKHRNNLTNEFSCYANFD 753
++ ELL ++ C F+P H + L NEF + ++D
Sbjct: 202 QREHAAELLGVRPCVFKPHHSSKLGNEFRLFISYD 236
>At5g61720.1 68418.m07744 expressed protein predicted protein,
Arabidopsis thaliana
Length = 390
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 358 GKVALISCPTLFVPLKRQIGDRGTVTLLEYDRRFEVHGPDY 480
GK++L C TL V L +GT +L Y + F G DY
Sbjct: 2 GKISLAICLTLLVTLSTVYETQGTFSLPLYLKNFPKLGKDY 42
>At2g44800.1 68415.m05575 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to flavonol synthase SP|Q96330
{Arabidopsis thaliana}, SP|Q07512 {Petunia hybrida};
contains Pfam profile PF03171: oxidoreductase,
2OG-Fe(II) oxygenase family
Length = 357
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = -2
Query: 211 VFYFVQHRIPVMQQMSLLTMWARLHLLPLHKKM 113
++ V HR+ V +++ L+ +A LH LPLHKK+
Sbjct: 280 IYKSVIHRVTVNKEVKRLS-FASLHSLPLHKKI 311
>At1g61850.1 68414.m06979 patatin family protein similar to
membrane-associated calcium-independent phospholipase A2
gamma; IPLA2 gamma [Homo sapiens] GI:8453174; contains
Patatin domain PF01734, PF00514:
Armadillo/beta-catenin-like repeat
Length = 1265
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = +1
Query: 121 CAMEADEDVPTLSAETFAALQEFYAEQSKRQEILVKLEVDKKLTENILFDENW 279
C ME DE P + + AA++EF QS Q V V ++LT L DE W
Sbjct: 779 CGMELDETDPAIWLKLEAAIEEFI--QSNPQ---VFKNVCERLTLPFLNDEKW 826
>At3g07160.1 68416.m00853 glycosyl transferase family 48 protein
similar to glucan synthase GB:AAD11794 [Filobasidiella
neoformans var. neoformans]
Length = 1931
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +1
Query: 133 ADEDVPTLS-AETFAALQEFYAEQSKRQEILVKLEVDKKLTENILFDENWQLSQFWYDEK 309
A +V T+ ++ LQEFY ++ + E +K+L E+ F + +L + K
Sbjct: 103 AKREVGTIDRSQDILRLQEFYRLYREKNNVDTLKEEEKQLRESGAFTD--ELERKTVKRK 160
Query: 310 TVHSLVKVIDKVLDDRGK 363
V + +KV+ VL+ K
Sbjct: 161 RVFATLKVLGSVLEQLAK 178
>At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 449
Score = 27.9 bits (59), Expect = 7.9
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = +1
Query: 100 ESIATSSCAMEADEDV----PTLSAETFAALQEFYAEQSKR--QEILVKLEVDKKLTENI 261
++ A SS + EA V P LS AAL EQ + ++LVKL D K+ EN+
Sbjct: 137 DAAAESSHSFEAPAAVSGLGPELSLLASAALSALTKEQGSQVDPDLLVKLLSDPKIVENL 196
Query: 262 L 264
+
Sbjct: 197 I 197
>At3g60290.1 68416.m06739 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to flavonol synthase 1
[SP|Q96330], gibberellin 20-oxidase [GI:9791186];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 316
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 211 VFYFVQHRIPVMQQMSLLTMWARLHLLPLHKKM 113
++ V HR+ V + L+ +A LH LP+HKK+
Sbjct: 239 IYKSVVHRVTVNKDYKRLS-FASLHSLPMHKKI 270
>At1g55620.2 68414.m06367 voltage-gated chloride channel family
protein contains Pfam profiles PF00654: Voltage gated
chloride channel, PF00571: CBS domain
Length = 781
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = +1
Query: 532 SYDLVVADPP----FLSEECITKTSETIKLLSKNKIILCTGTIMKD 657
S +L V + P FL EE I + + ++++SKN + + +GT +++
Sbjct: 591 SLELTVIENPDHNSFLDEETILEDLKVMRVMSKNYVKVSSGTTLRE 636
>At1g55620.1 68414.m06366 voltage-gated chloride channel family
protein contains Pfam profiles PF00654: Voltage gated
chloride channel, PF00571: CBS domain
Length = 585
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = +1
Query: 532 SYDLVVADPP----FLSEECITKTSETIKLLSKNKIILCTGTIMKD 657
S +L V + P FL EE I + + ++++SKN + + +GT +++
Sbjct: 395 SLELTVIENPDHNSFLDEETILEDLKVMRVMSKNYVKVSSGTTLRE 440
>At1g32930.1 68414.m04056 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 399
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 150 HIVSRDICCITGILC*TK*KTRNPCKA 230
HI R +CC T + C K + NPC A
Sbjct: 338 HIDDRSLCCGTPLDCEWKGQAGNPCAA 364
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,377,114
Number of Sequences: 28952
Number of extensions: 341182
Number of successful extensions: 979
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -