Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0132
         (733 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.5  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    23   3.4  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   5.9  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    22   5.9  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 252  SHPMETTKKSVDKSRRHNINR 314
            SHP+   +K  DK+  H  NR
Sbjct: 988  SHPLAALQKLCDKTETHTNNR 1008


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 234 WHQTPVSHPMETTKKSVDKSRRHNI 308
           WH   V +P E  ++ VDK+RR  I
Sbjct: 208 WHWHLV-YPFEGAREIVDKNRRGEI 231


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 95  KEEKIGGEERTKMKLKNVSWSLRXTDKXTPK 187
           KEE I  E +   KLK + + +   D+  P+
Sbjct: 151 KEEYISFESKVFHKLKKMKYLVEVQDEVKPR 181


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 306 YYVSLIYPHFFS 271
           YYV++ +PH F+
Sbjct: 500 YYVNVTFPHLFN 511


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,605
Number of Sequences: 336
Number of extensions: 3091
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)