Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0132
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa...   160   2e-40
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    27   2.8  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   3.6  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.8  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    26   4.8  

>SPBC25H2.07 |tif11||translation initiation factor
           eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score =  160 bits (388), Expect = 2e-40
 Identities = 75/108 (69%), Positives = 85/108 (78%), Gaps = 1/108 (0%)
 Frame = +1

Query: 151 LVFKEXGQXYAQVTKMLGNGRLEAMCFDGIKRLCHIRWKLRKKVWINQGDIILIGLRDYQ 330
           L + E GQ YAQVTKMLGNGR+EA CFDG+KRL HIR KLRKKVWINQGDIIL+ LR++Q
Sbjct: 26  LTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVWINQGDIILLSLREFQ 85

Query: 331 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDE-DIEF 471
           D K DVILKYT DEAR LK  GE PET +INET  +  +G D+ D EF
Sbjct: 86  DEKGDVILKYTADEARTLKNQGELPETAKINETDTFGAEGEDDLDFEF 133


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 328 QDAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGL 453
           ++ K++V ++YT D A      GE   ++   E V+YS+  L
Sbjct: 511 RNRKSNVKIEYTEDFATGFAISGEISHSINNLEFVLYSLSSL 552


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = -2

Query: 186 LGVXLSVFLKDQLTFFSFIFVLSSPPIFSSFTFVFRHVLYDFYYK 52
           + + +  +  + + FF F F  S   +FS F+F+F  + ++F+++
Sbjct: 93  IAIFIHPYDSNVVPFFCFFFYFS---LFSFFSFLFTSLHFNFFFR 134


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = -2

Query: 243 FDAIKAHGLQAAITEHLCDLGVXLSVFLKDQLTFFSFIFVLSSPPIFSSFTFVFRHVLYD 64
           FDA   H  +  +   LCD      V  +    F++ I+       FS   + F++ L+D
Sbjct: 418 FDAALTHRDRECLIHDLCDNDQLNDVVREFMNAFYNIIYEAHQAADFSQAIYDFQYFLWD 477


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 592 LKSCLITEGILQRLTANIINKAKNYIFTHH 503
           L++  + EG+ ++L  NI+N+  +YI   H
Sbjct: 554 LQTIWVAEGLPRKLMRNILNEYNDYILRWH 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,676
Number of Sequences: 5004
Number of extensions: 47801
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)