Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0132
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0256 + 13528331-13528765                                        154   6e-38
02_02_0566 + 11567415-11567843                                        151   4e-37
02_05_1082 - 33976038-33978035                                         33   0.18 
03_01_0098 - 773958-774144,775776-775902,776013-776088,776208-77...    32   0.41 
04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547...    31   0.94 
11_03_0093 - 9852075-9852871,9852911-9853009,9853208-9853646,985...    28   8.8  
05_04_0381 - 20794385-20794612,20794671-20794796                       28   8.8  
04_04_0979 - 29862280-29862444,29862718-29862999,29863831-298639...    28   8.8  

>06_02_0256 + 13528331-13528765
          Length = 144

 Score =  154 bits (374), Expect = 6e-38
 Identities = 74/103 (71%), Positives = 83/103 (80%)
 Frame = +1

Query: 151 LVFKEXGQXYAQVTKMLGNGRLEAMCFDGIKRLCHIRWKLRKKVWINQGDIILIGLRDYQ 330
           LVFKE GQ YAQVT+MLGNGR EA+C DG KRLCHIR K+ KKVWI  GDIIL+GLRDYQ
Sbjct: 26  LVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQ 85

Query: 331 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDE 459
           D KADVILKY  DEAR LK YGE P+T+R+NE V   VDG ++
Sbjct: 86  DDKADVILKYMNDEARLLKAYGELPDTLRLNEGV--DVDGPED 126


>02_02_0566 + 11567415-11567843
          Length = 142

 Score =  151 bits (367), Expect = 4e-37
 Identities = 72/104 (69%), Positives = 78/104 (75%)
 Frame = +1

Query: 151 LVFKEXGQXYAQVTKMLGNGRLEAMCFDGIKRLCHIRWKLRKKVWINQGDIILIGLRDYQ 330
           LVFKE GQ YAQV +MLGNGR EA C DG KRLCHIR K+ KKVWI  GDI+L+GLRDYQ
Sbjct: 26  LVFKEDGQEYAQVARMLGNGRCEAQCIDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQ 85

Query: 331 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDED 462
           D KADVILKY  DEAR LK YGE P+ VR+NE VV   D    D
Sbjct: 86  DDKADVILKYMNDEARLLKAYGEIPDHVRLNEGVVDEDDAAAHD 129


>02_05_1082 - 33976038-33978035
          Length = 665

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = +1

Query: 352 LKYTPDEARNLKTYGEFPETVRINETVV 435
           +K+ PD+ ++LK YG++P +++ + T V
Sbjct: 229 IKHNPDDVKSLKMYGKYPRSIKCDPTTV 256


>03_01_0098 -
           773958-774144,775776-775902,776013-776088,776208-776321
          Length = 167

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 169 GQXYAQVTKMLGNGRLEAMCFDGIKRLCHIRWKLRKKVWINQGDIILI 312
           G+   QV  + G+  +E M   G+K L     K +K  WI  G+ +++
Sbjct: 22  GESIMQVLALRGSNVIEVMDAKGVKSLALFPAKFQKSFWIKNGNFVVV 69


>04_04_0822 +
           28352941-28353825,28353863-28354016,28354714-28354754,
           28355060-28355310,28355411-28355591,28356138-28356323,
           28356396-28356569,28356992-28357150,28357424-28357501,
           28357612-28357748,28357980-28358044,28358115-28358148,
           28358216-28358372,28359135-28359196,28360041-28360118,
           28360940-28361042
          Length = 914

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 277 KVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPE-TVRINETVVYSVDGL 453
           KV + +GD++   LR      AD+  +      RN ++Y E  + +VRI  T V+S D +
Sbjct: 244 KVEVEEGDVVGKALRKCARISADLRQELYGSSTRNCESYAEIDDSSVRI-VTQVWSFDSM 302

Query: 454 D 456
           D
Sbjct: 303 D 303


>11_03_0093 -
           9852075-9852871,9852911-9853009,9853208-9853646,
           9853803-9854129
          Length = 553

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 237 AIKAHGLQAAITEHLCDLGVXLSVFLKDQLTFFSFIFVLSSP 112
           +I+AH    A    LCDLG  +SV  KD     +F  + S+P
Sbjct: 412 SIRAHQFDRA----LCDLGASVSVMPKDVFDKLNFTVLASTP 449


>05_04_0381 - 20794385-20794612,20794671-20794796
          Length = 117

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 215 WRPCALMASNACVTSDGNYEKKCG*IKE 298
           W PC+ +A + C  +DG++ ++ G  KE
Sbjct: 65  WWPCSPVAGDECAGTDGDWAEEDGSAKE 92


>04_04_0979 -
           29862280-29862444,29862718-29862999,29863831-29863929,
           29864037-29864366
          Length = 291

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 95  KEEKIGGEERTKMKLKNVSWS 157
           +EE+ GGE+R K+ + N+ WS
Sbjct: 70  EEEEEGGEKRRKLYVANIPWS 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,883,488
Number of Sequences: 37544
Number of extensions: 270011
Number of successful extensions: 594
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)