Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0132
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22379| Best HMM Match : No HMM Matches (HMM E-Value=.)             162   2e-40
SB_11333| Best HMM Match : eIF-1a (HMM E-Value=4.1e-05)                77   2e-14
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)                  29   5.1  

>SB_22379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score =  162 bits (394), Expect = 2e-40
 Identities = 73/103 (70%), Positives = 84/103 (81%)
 Frame = +1

Query: 151 LVFKEXGQXYAQVTKMLGNGRLEAMCFDGIKRLCHIRWKLRKKVWINQGDIILIGLRDYQ 330
           L+    G+ YAQV KMLGNGRLEA+CFDG+KRLCHIR KLRKKVWIN GDIIL+GLRDYQ
Sbjct: 96  LINDRQGEEYAQVVKMLGNGRLEALCFDGMKRLCHIRGKLRKKVWINTGDIILLGLRDYQ 155

Query: 331 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDE 459
           D KADVIL+Y PDEARNLK YGE PE  +IN+T ++  +  DE
Sbjct: 156 DTKADVILRYNPDEARNLKAYGELPENAKINDTNMFGPEEEDE 198


>SB_11333| Best HMM Match : eIF-1a (HMM E-Value=4.1e-05)
          Length = 72

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 33/40 (82%), Positives = 36/40 (90%)
 Frame = +1

Query: 289 NQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPE 408
           N+GDIIL+GLRDYQD KADVIL+Y PDEARNLK YGE PE
Sbjct: 31  NKGDIILLGLRDYQDTKADVILRYNPDEARNLKAYGELPE 70


>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
          Length = 456

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/74 (28%), Positives = 30/74 (40%)
 Frame = +2

Query: 38  VTVLCL**KSYKTCRKTKVKEEKIGGEERTKMKLKNVSWSLRXTDKXTPKSQRCSVMAAW 217
           V +LC       T R   V E+ I    RT++++  +       D+  P    C V+ A 
Sbjct: 266 VLILCT--NWQNTARVYGVCEDLIRNRRRTRVQM--IFGGGAEEDRIVPLINGCEVLVAT 321

Query: 218 RPCALMASNACVTS 259
            PC L     C TS
Sbjct: 322 PPCFLRMLKRCYTS 335


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,046,853
Number of Sequences: 59808
Number of extensions: 325772
Number of successful extensions: 773
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)