Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0132
         (733 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF164151-1|AAD47075.1|  148|Anopheles gambiae translation initia...   201   2e-53
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            29   0.20 
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    23   9.7  

>AF164151-1|AAD47075.1|  148|Anopheles gambiae translation
           initiation factor 4C (1A) protein.
          Length = 148

 Score =  201 bits (491), Expect = 2e-53
 Identities = 92/108 (85%), Positives = 100/108 (92%)
 Frame = +1

Query: 151 LVFKEXGQXYAQVTKMLGNGRLEAMCFDGIKRLCHIRWKLRKKVWINQGDIILIGLRDYQ 330
           L+FKE  Q YAQVTKMLGNGRLEAMCFDG+KRLCHIR KLRKKVWINQGDIILIGLRDYQ
Sbjct: 26  LIFKEDEQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 85

Query: 331 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDEDIEFG 474
           D+KADVILKYTPDEARNLKTYGEFPE+VRINETV +  + +D+DIEFG
Sbjct: 86  DSKADVILKYTPDEARNLKTYGEFPESVRINETVTFVENDMDDDIEFG 133


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 28.7 bits (61), Expect = 0.20
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 274 KKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFP 405
           K+  ++  + +++ +  Y   K   IL+YT D  R  K Y EFP
Sbjct: 757 KRYLVHAIENLIVVIVIYDKCKDVAILQYTSDRWRQQKYYDEFP 800


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +1

Query: 619 SSLQN*FVKKHKLKHYSIINMLHLFTLPEIYLLLK 723
           ++L+    +  K   Y ++NM  +    E+Y++LK
Sbjct: 319 NALKREIKRTKKATWYRLVNMSDIILFGEVYVILK 353


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,635
Number of Sequences: 2352
Number of extensions: 11486
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74844540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)