Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0132
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099920-3|AAK29845.1|  216|Caenorhabditis elegans Hypothetical ...   143   1e-34
AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z70783-8|CAA94859.1|  175|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF026209-10|AAB71273.2|  355|Caenorhabditis elegans Serpentine r...    28   5.9  

>AF099920-3|AAK29845.1|  216|Caenorhabditis elegans Hypothetical
           protein H06H21.3 protein.
          Length = 216

 Score =  143 bits (347), Expect = 1e-34
 Identities = 65/92 (70%), Positives = 73/92 (79%)
 Frame = +1

Query: 151 LVFKEXGQXYAQVTKMLGNGRLEAMCFDGIKRLCHIRWKLRKKVWINQGDIILIGLRDYQ 330
           L  KE GQ Y QV+KMLGNGR++  CFDG +R+CHIR KLRKKVWIN GDIIL+GLRDYQ
Sbjct: 26  LDLKEEGQEYGQVSKMLGNGRVQVFCFDGKQRVCHIRGKLRKKVWINVGDIILVGLRDYQ 85

Query: 331 DAKADVILKYTPDEARNLKTYGEFPETVRINE 426
           D K DVILKYTPDEAR LK  G  PE  ++NE
Sbjct: 86  DDKGDVILKYTPDEARRLKNEGLIPENAKLNE 117


>AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical
           protein K06A5.1 protein.
          Length = 629

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 65  SYKTCRKTKVKEEKIGGEERTKMKLKNVSWSLRXTDKXTP 184
           S KT RKTK+++ KI      K ++ +  WS+  + K  P
Sbjct: 102 SEKTPRKTKLRDGKIIDSNDQKQEVSSRKWSVGRSKKRPP 141


>Z70783-8|CAA94859.1|  175|Caenorhabditis elegans Hypothetical
           protein ZK856.11 protein.
          Length = 175

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +1

Query: 181 AQVTKMLGNGRLEAMCFDGIKRLCHIRWKLRKKVWINQGDIILI-GLRDYQDAKADVILK 357
           AQV +  GN   E +  +G   +  +  K RK VW+ +   +++  + +    K ++   
Sbjct: 28  AQVRQSRGNNLHEVLDQNGDSYVVSMPTKFRKSVWLRRDQFVVVRPITEGDKVKGEIEYI 87

Query: 358 YTPDEARNLKTYGEFP 405
              D    ++  G++P
Sbjct: 88  LDQDNVLYIRELGKWP 103


>AF026209-10|AAB71273.2|  355|Caenorhabditis elegans Serpentine
           receptor, class i protein4 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 150 LTFFSFIFVLSSPPIFSSFTFVFRHVLYDFYYKHKTVTLQKTH 22
           +TFF+FI  L  P + +   F++RH +       KT +L K H
Sbjct: 102 ITFFTFILCLQVPALLT--CFIYRHQVAAKCSPDKTWSLSKFH 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,529,543
Number of Sequences: 27780
Number of extensions: 263751
Number of successful extensions: 731
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)