Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0132
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.9  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.9  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.9  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.9  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.9  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   5.2  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   6.8  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   6.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.8  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   6.8  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 131 MKLKNVSWSLRXTDKXTP--KSQRCSVMAAWRPCALMASNACVTSDGNYE 274
           +KL+ V ++L+  +      K  R +    W+P  LM ++A    DG Y+
Sbjct: 39  LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQ 88


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 131 MKLKNVSWSLRXTDKXTP--KSQRCSVMAAWRPCALMASNACVTSDGNYE 274
           +KL+ V ++L+  +      K  R +    W+P  LM ++A    DG Y+
Sbjct: 39  LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQ 88


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 131 MKLKNVSWSLRXTDKXTP--KSQRCSVMAAWRPCALMASNACVTSDGNYE 274
           +KL+ V ++L+  +      K  R +    W+P  LM ++A    DG Y+
Sbjct: 39  LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQ 88


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 131 MKLKNVSWSLRXTDKXTP--KSQRCSVMAAWRPCALMASNACVTSDGNYE 274
           +KL+ V ++L+  +      K  R +    W+P  LM ++A    DG Y+
Sbjct: 39  LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQ 88


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 131 MKLKNVSWSLRXTDKXTP--KSQRCSVMAAWRPCALMASNACVTSDGNYE 274
           +KL+ V ++L+  +      K  R +    W+P  LM ++A    DG Y+
Sbjct: 39  LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQ 88


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 131 MKLKNVSWSLRXTDKXTP--KSQRCSVMAAWRPCALMASNACVTSDGNYE 274
           +KL+ V ++L+  +      K  R +    W+P  LM ++A    DG Y+
Sbjct: 39  LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQ 88


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 131 MKLKNVSWSLRXTDKXTP--KSQRCSVMAAWRPCALMASNACVTSDGNYE 274
           +KL+ V ++L+  +      K  R +    W+P  LM ++A    DG Y+
Sbjct: 107 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQ 156


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 131 MKLKNVSWSLRXTDKXTP--KSQRCSVMAAWRPCALMASNACVTSDGNYE 274
           +KL+ V ++L+  +      K  R +    W+P  LM ++A    DG Y+
Sbjct: 107 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQ 156


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 240 QTPVSHPMETTKKSVDKSRRHNINRPTRLSRCE 338
           QT V+  M    +S   +R H +NR  R++R +
Sbjct: 353 QTVVAMKMMHLPQSNKMNRMHRMNRVNRVNRMD 385


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -2

Query: 69  YDFYYKHKTVTLQKTHGL 16
           +D+YY + T+  ++++GL
Sbjct: 172 WDYYYIYHTLVAEQSYGL 189


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -2

Query: 69  YDFYYKHKTVTLQKTHGL 16
           +D+YY + T+  ++++GL
Sbjct: 187 WDYYYIYHTLVAEQSYGL 204


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +2

Query: 128 KMKLKNVSWSLRXTDKXTPKSQRCSVMAAWRPCALMASNACVTSDGNY 271
           K++  +V+     +D    +  R      W+P  LM ++A    DG Y
Sbjct: 77  KLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTY 124


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -2

Query: 69  YDFYYKHKTVTLQKTHGL 16
           +D+YY + T+  ++++GL
Sbjct: 75  WDYYYIYHTLVAEQSYGL 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,662
Number of Sequences: 438
Number of extensions: 3162
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)