Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0132
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35680.2 68418.m04264 eukaryotic translation initiation facto...   155   4e-38
At5g35680.1 68418.m04263 eukaryotic translation initiation facto...   155   4e-38
At2g04520.1 68415.m00458 eukaryotic translation initiation facto...   153   9e-38
At2g40780.1 68415.m05031 hypothetical protein                          32   0.34 
At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR...    29   2.4  
At4g38270.1 68417.m05406 glycosyl transferase family 8 protein c...    28   7.3  
At3g47660.1 68416.m05188 regulator of chromosome condensation (R...    28   7.3  
At3g27785.1 68416.m03466 myb family transcription factor (MYB118...    28   7.3  
At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 fam...    28   7.3  
At4g04400.1 68417.m00634 hypothetical protein contains Pfam prof...    27   9.7  

>At5g35680.2 68418.m04264 eukaryotic translation initiation factor
           1A, putative / eIF-1A, putative / eIF-4C, putative
           strong similarity to translation initiation factor
           (eIF-1A) [Beta vulgaris] GI:17977975; contains Pfam
           profile PF01176: Eukaryotic initiation factor 1A
          Length = 145

 Score =  155 bits (375), Expect = 4e-38
 Identities = 71/105 (67%), Positives = 82/105 (78%)
 Frame = +1

Query: 151 LVFKEXGQXYAQVTKMLGNGRLEAMCFDGIKRLCHIRWKLRKKVWINQGDIILIGLRDYQ 330
           L+FKE GQ YAQV +MLGNGR + MC DG+KRLCHIR K+ KKVWI  GDIIL+GLRDYQ
Sbjct: 26  LIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCHIRGKMHKKVWIAAGDIILVGLRDYQ 85

Query: 331 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDEDI 465
           D KADVILKY  DEAR LK YGE PE  R+NE +V  +D  D+D+
Sbjct: 86  DDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLDD-DDDV 129


>At5g35680.1 68418.m04263 eukaryotic translation initiation factor
           1A, putative / eIF-1A, putative / eIF-4C, putative
           strong similarity to translation initiation factor
           (eIF-1A) [Beta vulgaris] GI:17977975; contains Pfam
           profile PF01176: Eukaryotic initiation factor 1A
          Length = 145

 Score =  155 bits (375), Expect = 4e-38
 Identities = 71/105 (67%), Positives = 82/105 (78%)
 Frame = +1

Query: 151 LVFKEXGQXYAQVTKMLGNGRLEAMCFDGIKRLCHIRWKLRKKVWINQGDIILIGLRDYQ 330
           L+FKE GQ YAQV +MLGNGR + MC DG+KRLCHIR K+ KKVWI  GDIIL+GLRDYQ
Sbjct: 26  LIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCHIRGKMHKKVWIAAGDIILVGLRDYQ 85

Query: 331 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDEDI 465
           D KADVILKY  DEAR LK YGE PE  R+NE +V  +D  D+D+
Sbjct: 86  DDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLDD-DDDV 129


>At2g04520.1 68415.m00458 eukaryotic translation initiation factor
           1A, putative / eIF-1A, putative / eIF-4C, putative
           strong similarity to translation initiation factor
           (eIF-1A) [Beta vulgaris] GI:17977975; contains Pfam
           profile PF01176: Eukaryotic initiation factor 1A
          Length = 145

 Score =  153 bits (372), Expect = 9e-38
 Identities = 70/104 (67%), Positives = 81/104 (77%)
 Frame = +1

Query: 151 LVFKEXGQXYAQVTKMLGNGRLEAMCFDGIKRLCHIRWKLRKKVWINQGDIILIGLRDYQ 330
           L+FKE GQ YAQV +MLGNGR EAMC DG KRLCHIR K+ KKVWI  GDI+L+GLRDYQ
Sbjct: 26  LIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQ 85

Query: 331 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDED 462
           D KADVILKY  DEAR LK YGE PE  R+NE +V  ++  D++
Sbjct: 86  DDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLEDDDDN 129


>At2g40780.1 68415.m05031 hypothetical protein 
          Length = 171

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 163 EXGQXYAQVTKMLGNGRLEAMCFDGIKRLCHIRWKLRKKVWINQGDIILI 312
           E  Q  AQV  + G+ ++E M   G   L     K R+ +WI +G  ++I
Sbjct: 20  EECQSIAQVVSLRGSNQIEIMDAKGENSLALFPAKFRESMWIRRGSFVVI 69


>At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1025

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 184 QVTKMLGNGRLEAMCFDGIKRLCHIRWKLRKKVWINQGDIILIGLRD 324
           ++ K LGN ++  +  DG+ ++  +    ++K W   G  I+I  RD
Sbjct: 280 EIKKRLGNQKV-FLVLDGVDKVAQVHALAKEKNWFGPGSRIIITTRD 325


>At4g38270.1 68417.m05406 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 680

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +1

Query: 319 RDYQDAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDED 462
           RDY+   AD ILK   D+    K Y    ++  +    V+ +    E+
Sbjct: 207 RDYESPNADAILKLMRDQIIMAKAYANIAKSKNVTNLYVFLMQQCGEN 254


>At3g47660.1 68416.m05188 regulator of chromosome condensation
           (RCC1) family protein contains Pfam domain PF00415:
           Regulator of chromosome condensation (RCC1)
          Length = 951

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +3

Query: 261 METTKKSVDKSRRH 302
           M TTKK VDK+RRH
Sbjct: 934 MNTTKKEVDKTRRH 947


>At3g27785.1 68416.m03466 myb family transcription factor (MYB118)
           contains PFAM profile: PF00249 myb-like DNA binding
           domain
          Length = 437

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 178 YAQVTKMLGNGRLEAMCFDGIKRLCHIRWKLRKKVWINQGDIILI 312
           ++Q+ KML  GR+   C +      H+R  ++K  W  + DIILI
Sbjct: 212 WSQIAKML-QGRVGKQCRERWHN--HLRPDIKKDGWTEEEDIILI 253


>At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 756

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 159 KDQLTFFSFIFVLSSPPIFSSFTFVFRHVL 70
           KD   F +F+F++S+ P FS F    R +L
Sbjct: 562 KDSQVFNTFLFIVSAFPFFSRFLQCMRRML 591


>At4g04400.1 68417.m00634 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 735

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 699 KCEQMKHINNTIMFQLVFFYKLILKTG 619
           KC +MKH +N +   L++F   ++K G
Sbjct: 338 KCSKMKHGSNRLKLVLLYFLVKVVKAG 364


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,420,707
Number of Sequences: 28952
Number of extensions: 235876
Number of successful extensions: 571
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)