Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0131
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 142 5e-35
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 56 7e-09
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 55 9e-09
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 51 2e-07
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 51 2e-07
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 49 8e-07
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 48 1e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 47 2e-06
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 47 3e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 45 1e-05
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 43 5e-05
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 43 5e-05
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 42 1e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 41 2e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 41 2e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 40 4e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 5e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 7e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 38 0.002
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 0.002
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 38 0.002
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 38 0.002
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 37 0.003
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.004
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 36 0.005
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 36 0.006
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.019
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 34 0.019
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 34 0.019
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 34 0.025
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.057
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 32 0.076
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 32 0.10
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.18
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.18
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 30 0.31
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 30 0.31
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 29 0.71
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 0.94
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 29 0.94
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 1.6
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 28 1.6
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 2.2
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 27 2.2
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 27 3.8
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 26 5.0
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 5.0
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 26 6.6
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 6.6
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 6.6
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 26 6.6
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 26 6.6
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 8.7
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 142 bits (344), Expect = 5e-35
Identities = 69/162 (42%), Positives = 101/162 (62%), Gaps = 5/162 (3%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
ETTD LRD+F +GE+ V D TGRSRGF F+ FK P+ +++VM+ EH ++ K
Sbjct: 173 ETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKI 231
Query: 183 VDPKKAKARH-----GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC 347
+DPK+A R K+FVGG+ + +++E RNFF++FG +L+ + DK + +GF
Sbjct: 232 IDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFG 291
Query: 348 FITFESEQVVNDLLKTPKRTIGGKEVDVKRATPTLLATATHD 473
F+T+E+E V + P TI GK V+VKRATP +HD
Sbjct: 292 FVTYENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSHD 333
Score = 70.5 bits (165), Expect = 2e-13
Identities = 30/78 (38%), Positives = 54/78 (69%)
Frame = +3
Query: 213 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 392
GK+F+GGL+ E +DD +R++F +FG +L+ + D T + +GF F+TF++ + VN+++
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM- 221
Query: 393 TPKRTIGGKEVDVKRATP 446
+ + + GK +D KRA P
Sbjct: 222 SKEHHLDGKIIDPKRAIP 239
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 55.6 bits (128), Expect = 7e-09
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVD 188
D+ L F YG I V D +GRS+G+ ++ F+ PE+ +AA G I+ + V+
Sbjct: 276 DQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVN 335
Query: 189 -----PKKA------KARHGK-----------IFVGGLSSEISDDEIRNFFSEFGTILEV 302
P+ A + R G +FVG LS ++D++ F G I +
Sbjct: 336 LDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSI 395
Query: 303 EMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATP 446
+P D + KGF ++TF ++ I G+ + +TP
Sbjct: 396 RLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTP 443
Score = 46.0 bits (104), Expect = 6e-06
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 170
T+ +L FG G+I+SI + TDP +GR +GF ++ F +S K + H I
Sbjct: 378 TEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFI 431
Score = 39.1 bits (87), Expect = 7e-04
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 398
+FVG LS + D + F E+GTI+ + D + KG+ ++ FE+ + K
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAA----KAA 320
Query: 399 KRTIGGKEVD 428
G KE+D
Sbjct: 321 VAANGTKEID 330
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 55.2 bits (127), Expect = 9e-09
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV- 185
T+ L + F + G + SI V D T RS G+A++ F E +K + +T+ +
Sbjct: 92 TEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPC 151
Query: 186 -------DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 344
DP K G +F+ L I + + + FS FG IL ++ D+ N KG+
Sbjct: 152 RIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGN-AKGY 210
Query: 345 CFITFESEQVVN 380
F+ F+S + N
Sbjct: 211 GFVHFDSVESAN 222
Score = 41.9 bits (94), Expect = 9e-05
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 149
E D+ L+ F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 374 EVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAV 421
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 50.8 bits (116), Expect = 2e-07
Identities = 25/79 (31%), Positives = 42/79 (53%)
Frame = +3
Query: 159 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 338
E TI K + K + + G ++VG L + ++R +FS+FG +L + M ++ K
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK 146
Query: 339 GFCFITFESEQVVNDLLKT 395
+ FI FES V N + +T
Sbjct: 147 HYAFIEFESLDVANVVAET 165
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 50.8 bits (116), Expect = 2e-07
Identities = 29/111 (26%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Frame = +3
Query: 129 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 308
+ ++ + A H + P + +A ++FVG LS+ EIR+ F GT+ +V +
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 309 PFDKTKNQRK----GFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATP 446
PF + + + G F+TF +++ V+ ++T +T+ +E+ V++A P
Sbjct: 76 PFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARP 126
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSR----GFAFIVFKAPESIDKVMAAGEHTIN 173
T E+R F G + + + +R G AF+ F E +DK + T+N
Sbjct: 55 TKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAI----ETLN 110
Query: 174 NKKVDPKK 197
K +D ++
Sbjct: 111 GKTLDDRE 118
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 48.8 bits (111), Expect = 8e-07
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 167
ETTD +L++HFG G+I + + T +TG+ +GF F+ F ++ K M G ++
Sbjct: 238 ETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNS 292
Score = 33.1 bits (72), Expect = 0.043
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 359
+FVG L E +D +++ F + G I V + + + KGF F+ F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 48.4 bits (110), Expect = 1e-06
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLK 392
++F+ L+ ++D++++ F FG + +V MP DK N KGF +I F +++ V L+
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 393 TPKRTIGGKEVDV---KRATPTLLATATHDTLPLR 488
+ G+ + V K + LL LPL+
Sbjct: 384 LDAKPFQGRLLHVLPAKARSSILLDDYALSKLPLK 418
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 47.2 bits (107), Expect = 2e-06
Identities = 27/105 (25%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Frame = +3
Query: 138 DKVMAAGEHTINNKKVD---PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 308
D+V E T +KK P+ ++ +FV G++S + +DE++ FS+FGT+ V +
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRI 132
Query: 309 PFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDVKRA 440
+ +GF F++F + E+ + + + G+ ++V++A
Sbjct: 133 MREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
Score = 32.3 bits (70), Expect = 0.076
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 131
+ EL+ F +G + + + +P T SRGF F+ F E
Sbjct: 114 EDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVE 153
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 46.8 bits (106), Expect = 3e-06
Identities = 22/79 (27%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +3
Query: 210 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDL 386
H ++FVG L ++++D+ + FSE+ ++++ ++ D+ + + +GF F++F +S+Q +
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFLKAW 87
Query: 387 LKTPKRTIGGKEVDVKRAT 443
+ + IG + V + RAT
Sbjct: 88 REKNGKYIGSRPVKLSRAT 106
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 122
+ D+ L F Y + V D G++RGF F+ FK
Sbjct: 40 DVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFK 78
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.8 bits (101), Expect = 1e-05
Identities = 17/51 (33%), Positives = 33/51 (64%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 371
I++G L ++++D+I FSEFG +++ + DK + KGF F+ +E ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
Score = 33.5 bits (73), Expect = 0.033
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 33 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 134
F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 51 FSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 42.7 bits (96), Expect = 5e-05
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK--K 182
T +EL+ HF + G + + + D TG +GFA+I F P + + ++ + K
Sbjct: 67 TPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLK 126
Query: 183 VDPKK 197
V PK+
Sbjct: 127 VTPKR 131
Score = 36.3 bits (80), Expect = 0.005
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 389
++VG + ++ +E+++ F+ G++ V + DK KGF +I F +V + L
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 42.7 bits (96), Expect = 5e-05
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Frame = +3
Query: 159 EHTINNKKVDPKKAKARHGK-------IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 317
+H+++N K+K + GK +FVG L + S + ++ F G + V +P D
Sbjct: 67 KHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTD 126
Query: 318 KTKNQRKGFCFITF 359
KT ++KG+ F+ F
Sbjct: 127 KTSGRQKGYAFVEF 140
Score = 39.1 bits (87), Expect = 7e-04
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES--IDKVMAAGEHTI-N 173
+++ + L+ HF G++ S+ + TD +GR +G+AF+ F P++ I K + HTI
Sbjct: 102 DSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALKF-HHTIYK 160
Query: 174 NKKVDPKKAKARHGK 218
+K++ + GK
Sbjct: 161 ERKINIELTAGGGGK 175
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 41.5 bits (93), Expect = 1e-04
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +3
Query: 132 SIDKVMAAGEHTINNKKVDPKKAKA--RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 305
SI ++ A + I K D + A + ++VG LS ++++I FS+ G I +
Sbjct: 3 SITRLDAVSPYLIRRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRII 62
Query: 306 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT 407
M D+ GFCF+ + Q D LK RT
Sbjct: 63 MGVDRFTKTPCGFCFVEYFENQDALDSLKYISRT 96
Score = 25.8 bits (54), Expect = 6.6
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI-VFKAPESIDKVMAAGEHTINNKK 182
TT++++ F GEI I + D T GF F+ F+ +++D + +++ +
Sbjct: 43 TTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYISRTSLDERI 102
Query: 183 VDPKKAKA-RHGKIFVGGLSSEISDDEIRNFF 275
+ G+ + G S DE+R F
Sbjct: 103 IRADLDHGYEEGRQYGRGASGGQVRDEMREEF 134
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 41.1 bits (92), Expect = 2e-04
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND-LLKT 395
+FVG L+ E ++ + +F + G+I V + D N KGF +I F+ V+ LL
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 396 PKRTIGGKEVDVKRATPT 449
K+ G+ + + RA T
Sbjct: 332 EKKMPEGRTLRIMRAKST 349
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 161
E ++ L +FG G I+ + + DP T +GFA+I FK +DK + E
Sbjct: 280 EAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNE 332
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/39 (41%), Positives = 27/39 (69%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 119
+T ++ELRD F +G I+ + + D TGR++GFAF+ +
Sbjct: 212 DTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 192 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 359
K+ + + V LS + ++E+R+ F FG I V + DK + KGF F+++
Sbjct: 195 KRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 39.9 bits (89), Expect = 4e-04
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 20/139 (14%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA-AGEHTINNKKV 185
T +EL D F G + + D +GRS+G A++ F +S+ +A +G+ + +
Sbjct: 252 TSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVI 311
Query: 186 -----DPKKAKARHG--------------KIFVGGLSSEISDDEIRNFFSEFGTILEVEM 308
K KAR ++ V + ++D++++ F FG I V +
Sbjct: 312 VQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHL 371
Query: 309 PFDKTKNQRKGFCFITFES 365
D +N+ KGF +I + +
Sbjct: 372 QRD-DQNRSKGFGYIQYRN 389
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-T 395
+FV L++ ++ E+ +FF + G + + ++ DK + KG ++ F E V + +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 396 PKRTIG 413
KR +G
Sbjct: 302 GKRLLG 307
Score = 33.1 bits (72), Expect = 0.043
Identities = 14/42 (33%), Positives = 29/42 (69%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 134
TD++++ F +G+IE ++++ D + RS+GF +I ++ P S
Sbjct: 352 TDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPIS 392
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.5 bits (88), Expect = 5e-04
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +3
Query: 189 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 311
P+ A + +FVGGLS +S++E++ F FG I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 29.1 bits (62), Expect = 0.71
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 42 YGEIESINVKTDPNTGRSRGFAFIVF 119
Y +S + TDP T SRG+ F+ F
Sbjct: 210 YNSCKSAKIMTDPQTNVSRGYGFVRF 235
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 39.1 bits (87), Expect = 7e-04
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 320
+FVGGL+S +S+ +++ F FG IL +++PF K
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 122
+T + ++ F YG IE I V + TG+S G+AF+VF+
Sbjct: 110 DTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKT 395
I V L+ ++ + I F +G I + MP K KG+C+I + +Q N + K
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 396 PKRTIGGKE--VDVKR 437
+ G+E V +KR
Sbjct: 161 NNAELDGEELFVSIKR 176
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 37.5 bits (83), Expect = 0.002
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 15/104 (14%)
Frame = +3
Query: 168 INNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI-------------LEVE 305
+NN K+ P + + I+VG + S +SD+EI FS++G + E
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKA 60
Query: 306 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVK 434
PF KN + + F+ F + + + ++LK K T+G +++ +K
Sbjct: 61 KPFKPPKNGVQ-YGFVKFVNAESIEEVLKDAKGMTLGQRKLTIK 103
Score = 34.3 bits (75), Expect = 0.019
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 185
T +L D F +G I S + PN+G S+G+ F+ F+ E+ + T+N V
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA----AVRAKDTLNGMMV 450
Query: 186 DPKK 197
K+
Sbjct: 451 GKKR 454
Score = 26.6 bits (56), Expect = 3.8
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESI----------NVKTDPNTGRSRG--FAFIVFKAPESIDKVMA 152
+D+E+ HF YG++ESI K P G + F+ F ESI++V+
Sbjct: 29 SDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVKFVNAESIEEVLK 88
Query: 153 -AGEHTINNKKVDPKKAKARHGKI 221
A T+ +K+ K K+
Sbjct: 89 DAKGMTLGQRKLTIKARVVNPAKL 112
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 137
T ++LR HF ++GE+ +++K +P TG S G I F SI
Sbjct: 106 TSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSI 148
Score = 34.3 bits (75), Expect = 0.019
Identities = 11/55 (20%), Positives = 29/55 (52%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 380
++FV +S ++ +++R F FG + ++++ + G C I+F+ ++
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSIS 149
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+ T+ +L D FG + SI + DP T RSRGF ++ F+ +++ +A + +
Sbjct: 104 DLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGRP 161
Query: 183 VDPKKAKAR 209
V A+ R
Sbjct: 162 VRITVAEPR 170
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/74 (22%), Positives = 38/74 (51%)
Frame = +3
Query: 225 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 404
VG LS +++++++ +FF E + + + D + +GF ++ FE+ ++ L
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 405 TIGGKEVDVKRATP 446
+ G+ V + A P
Sbjct: 156 DLMGRPVRITVAEP 169
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.7 bits (81), Expect = 0.004
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+T +L + F G I+ V T+P TG +RG+ F+ F E D AA E + NKK
Sbjct: 15 QTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE--DAQRAAKE--LKNKK 70
Query: 183 V 185
+
Sbjct: 71 L 71
Score = 36.3 bits (80), Expect = 0.005
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 398
+FV L+ + D++ NFFS+ G I + + + +G+ F+TF + K
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 399 K-RTIGGKEVDVKRATP 446
K + + G+ + + ATP
Sbjct: 67 KNKKLHGRILRLDFATP 83
Score = 34.7 bits (76), Expect = 0.014
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 122
E T++EL +HF +G + + DP T RS G FI F+
Sbjct: 287 ECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
Score = 33.9 bits (74), Expect = 0.025
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Frame = +3
Query: 132 SIDKVMAAGEHTINNKKVDP--KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 305
++D V +G+ + + ++ + + +FV L E ++ E+ N F +FG + +
Sbjct: 248 NVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAK 307
Query: 306 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDV-KRATPTLLATATHDT 476
+ D ++ G FI F E+ + L+ + + + KR P++L DT
Sbjct: 308 LVKDPATDRSLGRGFIKFRYEKDCQNCLEMASQLPTQEPTEAEKRFLPSVLVDEGIDT 365
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 36.3 bits (80), Expect = 0.005
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK-NQRKGFCFITFESEQVVNDLLK 392
+I+VGGLSS I ++ + FS FG++ +E+ T + F ++ F +++ K
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 393 T--PKRTIGGKEVDVKRATPTLL 455
+ T G ++ ++ A P L
Sbjct: 66 SYLSNATFKGSKLRIEEARPYYL 88
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 35.9 bits (79), Expect = 0.006
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 143
T D++L F +G+I S V D TG S +AFI F ES++K
Sbjct: 255 TQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
Score = 32.3 bits (70), Expect = 0.076
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 377
+FV L+ D+++ FS FG I+ ++ DK + FI F++++ V
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESV 298
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.3 bits (75), Expect = 0.019
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 365
KI++ L + +D++ FG +L ++ + KGFCF F++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 42 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNK 179
+G++ S + + G S+GF F FK P + ++ G+ T NK
Sbjct: 333 FGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGLDGKDTYGNK 380
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 34.3 bits (75), Expect = 0.019
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT-FESEQVVNDLLKT 395
+FVG + ++S+ ++ F++ G + ++ D KG+ F F+SE + K
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 396 PKRTIGGKEVDVK 434
+G +++ V+
Sbjct: 69 NNSELGPRKIRVE 81
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 34.3 bits (75), Expect = 0.019
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +3
Query: 171 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 350
+NKK + ++ +R +++ GL SD+ + + + FG + + D N KG+ F
Sbjct: 283 DNKKSN-MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF 341
Query: 351 ITFESEQ 371
FE E+
Sbjct: 342 ACFEEEK 348
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 33.9 bits (74), Expect = 0.025
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3
Query: 225 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 404
V L ++ + ++ + F F I V M +D+ + +G C + FE+ Q D KT +
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPI-RVIMNYDRA-GRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 405 T-IGGKEVDVKRATPTLL 455
T + G E+ + + +P L
Sbjct: 147 TNLKGSEIQISKKSPPSL 164
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 32.7 bits (71), Expect = 0.057
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 192 KKAKARHGKIF-VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 359
+ AK+ G I V G+ E +++++ + F++FG + + + D+ KG+ I +
Sbjct: 2 RPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEY 58
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 32.3 bits (70), Expect = 0.076
Identities = 14/69 (20%), Positives = 35/69 (50%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+ +K++ F YG++ES+ + N + +GF ++V + + ++A + N+
Sbjct: 767 KVNEKDVETFFRDYGQVESVRIPKRFN--QHKGFGYVVMTTNQDAENALSAAGKQLGNRV 824
Query: 183 VDPKKAKAR 209
++ +K R
Sbjct: 825 LNVVLSKPR 833
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.9 bits (69), Expect = 0.10
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 15 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMAAGEHTINNKKVDP 191
++L + F +G I+S + + P+T S+G+ F+ F P E++ + K++
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 192 KKAKARHGK 218
A+ R +
Sbjct: 495 NYAEKREDR 503
Score = 27.9 bits (59), Expect = 1.6
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Frame = +3
Query: 147 MAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK 326
M A E K KK + I+VG L S ++ F FG + M + K
Sbjct: 1 MIALEKLSEKNKRSTKKCEI---SIYVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKK 56
Query: 327 NQRKG------FCFITFESE 368
N+ F FITFE++
Sbjct: 57 NKSTDSKSPTLFAFITFENK 76
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +3
Query: 219 IFVGGLSSEI--SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT----FESEQVVN 380
+FV L I + ++ FS+FG I + + KG+ F++ FE+ Q +N
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 381 DL 386
L
Sbjct: 481 TL 482
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 31.1 bits (67), Expect = 0.18
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 249 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 428
+++ IR+FFS+FG + +VE+ N C + F S + N+ +P+ + +
Sbjct: 255 NEENIRSFFSKFGVLEKVEL------NPTHHSCVLEFTSHEAANNAWSSPEPIFNNRFIK 308
Query: 429 V 431
+
Sbjct: 309 I 309
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 31.1 bits (67), Expect = 0.18
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 359
++VG + E++++++ + F + G + ++ D Q KG+ F +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 30.3 bits (65), Expect = 0.31
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +3
Query: 237 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 365
+ +++D +R+ +S FGT+ V + D +K ++ + I FE+
Sbjct: 176 ADQVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 30.3 bits (65), Expect = 0.31
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK----APESIDKV 146
T+D+ L D F G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 291 TSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 29.1 bits (62), Expect = 0.71
Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 8/115 (6%)
Frame = +3
Query: 45 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV-MAAGEHTINNKKVDPKKAKARHG-- 215
G + +I++ D GF F F + ++ + + K + +A G
Sbjct: 35 GPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQDRGVN 94
Query: 216 -----KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 365
+FVG L + + + + FS G +++ + KG+ F++++S
Sbjct: 95 TLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDS 149
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.94
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +3
Query: 183 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 344
+ P K +F+GG++ + + +R+ F FG++ + + N R GF
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLIL----NHNYRHGF 445
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 28.7 bits (61), Expect = 0.94
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +3
Query: 24 RDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 203
R++ GE+E V +P + ++F K+ A +++ +++DP K
Sbjct: 344 RENLLEVGEVEQSLVCNEPQSTDFNDIQRLLFSNISENTKLRLAALYSLRFERIDPAKVS 403
Query: 204 ARHGKIFVGGLS 239
A + GG++
Sbjct: 404 ALQQMLIAGGVN 415
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEM 308
+F+G L + I++DEIR FG I ++++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKI 237
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 189 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 329
P++ + +GK L+S ++E+RN FSEF LE E+ F+ ++
Sbjct: 946 PEEIRKLNGKKI---LNSFFDNEELRNEFSEFIQHLESEVSFNSLRS 989
Score = 26.6 bits (56), Expect = 3.8
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +3
Query: 222 FVGGLSSEISDDEIRNFFSEFGTILEVE-MPFDKTKNQRKG-FCFITFESEQVVNDLLKT 395
F+ L SE+S + +R+F EF ++ +PF + +Q G F + + K
Sbjct: 974 FIQHLESEVSFNSLRSFVQEFEKKERLKNLPFYFSLHQTIGPLPFKDEMQSTTIEYIWKI 1033
Query: 396 PKRTIGGKEVDVKRATPTLLATATH 470
P++ + K ++ T T L + TH
Sbjct: 1034 PQKVLLNKPTEI---TLTFLRSLTH 1055
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 96 RGFAFIVFKAPESIDKVMAAGEHTINNKK 182
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 398
++V L I+ E+R++F FG IL ++ N + + +EQ +N++ P
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQV----NNNSGRIVFAQRYFAEQAINEMNNFP 233
Query: 399 KRTIGGKEVDVKRATPTLLA 458
+ G + + A P +A
Sbjct: 234 ---LHGVRIQLSWARPPSMA 250
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 3 ETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVFKAP 128
+ T+ ++++ F + G + +++ PN GRS+G A I+F P
Sbjct: 65 DVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 363 SEQVVNDLLKTPKRTIGGKEVDVKRA---TPTLLATATHDTL 479
S+ + + + K K T+GGKE+ + PT+L+ T D L
Sbjct: 350 SKHIEDAVSKGAKITVGGKEISSSKGYFFEPTVLSGVTQDML 391
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEM 308
+F+G L S + EI F +FG I +++
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 25.8 bits (54), Expect = 6.6
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
E D ++R HF YG ++S+ + R++ AF+ FK S + +AA N
Sbjct: 222 ELADYKIRKHFEQYGPLKSVVC-----SHRAK-CAFVNFKTRSSAE--IAAAASPDGNVV 273
Query: 183 VDPKKAKARHGK-IFVGGLSSEISDDEI 263
++ + K + GK +GG E+ + ++
Sbjct: 274 IEGFRLKVQWGKPRSLGGPEGEVRNAKL 301
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 203 FSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTLYFTV 42
F+LL L + GV Y ++ + H+ G P WICL+ +F +
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFII 138
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 389
++FVG + + + +++ +FF +G IL+ ++ GF F+ E + D++
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKL--------MNGFGFVEVEDARDARDIV 54
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 139 SIDSGALNTMKANPRDLPVFGSVFTLILSISPYAPK*SRSSLS 11
S DS A N A P P+F S + ++ S K +RSS S
Sbjct: 152 SKDSNAFNDPSAIPNPSPLFSSAYATRINGSLRNDKWNRSSFS 194
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 561 NVI*ESNRCKNL-RIKQCRGRARRLTSRFII 650
N++ N C+ + + Q RGRAR + S+F+I
Sbjct: 443 NLVIRFNICRTVTQYVQSRGRARAMASKFLI 473
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -3
Query: 239 AESSDKNLPMSCFSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYIN 60
++ L M C +++ F +F S ++V +GLK++ SA V I + N
Sbjct: 1191 SDEETTQLAMDCLAVMAKRFSASPELFISPIEVVSGPYGLKNSARDVQVSAIVCITVLTN 1250
Query: 59 TL 54
TL
Sbjct: 1251 TL 1252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,948
Number of Sequences: 5004
Number of extensions: 58910
Number of successful extensions: 232
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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