Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0131
(751 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 113 2e-25
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 90 2e-18
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 82 4e-16
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 3e-15
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 4e-14
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 1e-13
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 73 3e-13
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 62 5e-10
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 62 5e-10
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 54 1e-07
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 54 2e-07
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 51 1e-06
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 51 1e-06
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 50 3e-06
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 48 6e-06
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 48 6e-06
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 47 2e-05
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 46 3e-05
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 46 4e-05
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 45 8e-05
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 44 1e-04
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 42 7e-04
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 42 7e-04
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 41 0.001
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 38 0.011
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 31 0.012
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 37 0.020
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 37 0.020
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 36 0.035
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.061
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 35 0.081
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 34 0.11
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 33 0.19
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 33 0.25
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 32 0.43
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 32 0.43
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22) 32 0.57
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 29 3.0
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 29 5.3
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 29 5.3
SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096) 29 5.3
SB_1422| Best HMM Match : Synaphin (HMM E-Value=7.3) 28 7.0
SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36) 28 9.3
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 28 9.3
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 113 bits (271), Expect = 2e-25
Identities = 58/149 (38%), Positives = 87/149 (58%), Gaps = 1/149 (0%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
ETT + L+++F YGE+ +++K D TGR RGFAF+ FK D + I
Sbjct: 39 ETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEADAIDPKPAAPIG--- 95
Query: 183 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITF 359
K R KIFVGGL E SD++IR +F + + + E+E + + N+R+GFCF++F
Sbjct: 96 ---KPPHLRVKKIFVGGLKPETSDEKIREYFGKAYAPVKEIEYITEHSSNRRRGFCFVSF 152
Query: 360 ESEQVVNDLLKTPKRTIGGKEVDVKRATP 446
+SE V+ + +T I G +V+VKRA P
Sbjct: 153 DSEDTVDKICETQFHNIEGNKVEVKRALP 181
Score = 52.0 bits (119), Expect = 5e-07
Identities = 21/67 (31%), Positives = 40/67 (59%)
Frame = +3
Query: 213 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 392
GK+FVGGLS E + + ++ +FS++G ++ V++ D + +GF F+ F+ + + +
Sbjct: 29 GKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEADAIDP 88
Query: 393 TPKRTIG 413
P IG
Sbjct: 89 KPAAPIG 95
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 90.2 bits (214), Expect = 2e-18
Identities = 48/166 (28%), Positives = 101/166 (60%), Gaps = 19/166 (11%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEI-ESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
TT++ L+D+F +G I + + +K D GRSRGF F+ +++ +S+++V+ +H +++++
Sbjct: 61 TTEEGLKDYFSQWGTIVDCVIMKRD---GRSRGFGFVTYESSDSVNEVLKKKDHVLDDRE 117
Query: 183 VDPKK-----------AKARHGKIFVGGLSSEISDDEIRNFFSE------FGTILEVEMP 311
++PK+ A ++ KIFVGGL+S +++I+ +F+ G +++V++
Sbjct: 118 IEPKRSVPRDESGAPEAMSKTRKIFVGGLASTTVEEDIKEYFNSLCRKNGMGEVIDVDLK 177
Query: 312 FDKTKNQR-KGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATP 446
D+ +R +GF F+TF+++++V + I K+ +VK+A P
Sbjct: 178 RDRDNPKRIRGFAFVTFDNDEIVEKVCAMKYHEIRMKQCEVKKAEP 223
Score = 61.3 bits (142), Expect = 8e-10
Identities = 27/77 (35%), Positives = 50/77 (64%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
KIF+GGL+ +++ ++++FS++GTI V+ K + +GF F+T+ES VN++LK
Sbjct: 51 KIFIGGLNWNTTEEGLKDYFSQWGTI--VDCVIMKRDGRSRGFGFVTYESSDSVNEVLKK 108
Query: 396 PKRTIGGKEVDVKRATP 446
+ +E++ KR+ P
Sbjct: 109 KDHVLDDREIEPKRSVP 125
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 82.2 bits (194), Expect = 4e-16
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 1/149 (0%)
Frame = +3
Query: 21 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 200
LR HF +GE++ V DP T RSRGF F+ FK P+++D V+ +G +++D KK
Sbjct: 124 LRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGA-----QELDGKKM 178
Query: 201 KARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF-ITFESEQVV 377
KIF+GGLS+ S+++++ +FS+FG + E + K++ + +
Sbjct: 179 VTTTKKIFIGGLSTNTSEEDMKKYFSQFGKV-SCEYETEDVKDELAAVLISVHSNGTHIT 237
Query: 378 NDLLKTPKRTIGGKEVDVKRATPTLLATA 464
N TP +T K V+R T + T+
Sbjct: 238 NQTPSTPNQT--AKVEKVRRPTVSSAGTS 264
Score = 36.3 bits (80), Expect = 0.027
Identities = 16/62 (25%), Positives = 35/62 (56%)
Frame = +3
Query: 240 SEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 419
++ S + +R F +FG + E + D + +GF F+TF+ + V+ +L + + + GK
Sbjct: 117 TQASAEGLRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGAQELDGK 176
Query: 420 EV 425
++
Sbjct: 177 KM 178
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 79.4 bits (187), Expect = 3e-15
Identities = 49/165 (29%), Positives = 92/165 (55%), Gaps = 19/165 (11%)
Frame = +3
Query: 3 ETTDKELRDHF-----GAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAAGE- 161
+TT++ +R +F G+ ++ S+++ P G+SR F F+ F + ID ++ E
Sbjct: 18 DTTEETVRAYFKSFCEGSEADVSSVSLAKTPE-GKSRKFCFVEFSNGSDIIDNIVFNFES 76
Query: 162 HTINNKKVDPKKAKARHG----------KIFVGGLSSEISDDEIRNFFSEFGTI--LEVE 305
H+I+NK+V+ K+A R K+F+GGL E S+++++ + LE++
Sbjct: 77 HSIDNKQVEVKRAMPRDDPNELAHVRTKKLFIGGLKDEHSEEDVKTALAPLSPFAPLEIK 136
Query: 306 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 440
M D+ N+ KG+CF+ F +E +V+ L + GK+V++K+A
Sbjct: 137 MVRDRETNKFKGYCFVNFPNEHIVDKLYLVRHIQVKGKDVEMKKA 181
Score = 46.0 bits (104), Expect = 3e-05
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEF--GTILEV-EMPFDKT-KNQRKGFCFITFE--SEQVV 377
K+FVGGL+ + +++ +R +F F G+ +V + KT + + + FCF+ F S+ +
Sbjct: 9 KLFVGGLNEDTTEETVRAYFKSFCEGSEADVSSVSLAKTPEGKSRKFCFVEFSNGSDIID 68
Query: 378 NDLLKTPKRTIGGKEVDVKRATP 446
N + +I K+V+VKRA P
Sbjct: 69 NIVFNFESHSIDNKQVEVKRAMP 91
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 75.8 bits (178), Expect = 4e-14
Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 18/166 (10%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF---KAPESI--DKVMAAGEHT 167
ETT++ LR++F AYGE+ + V D T +SRGF ++ F K ++ DKV G H
Sbjct: 24 ETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTRNVLKDKV-ENGAHR 82
Query: 168 INNKKVDPKKAKARHG----------KIFVGGLSSEISDDEIRNFFSEF--GTILEVEMP 311
I+ K+V+ K+A R KIFVGGL + + ++I+ + +V++
Sbjct: 83 IDGKEVEVKRAIPRDDNSATSHEKTKKIFVGGLPEDATKEDIQEAIESLLEEKVDKVDLI 142
Query: 312 FDK-TKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATP 446
K + + +GF F+ +E ++L K + GK V+ K+ATP
Sbjct: 143 MKKEDETKHRGFAFVELNNEDQADELCCVKKIHVKGKMVEAKKATP 188
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK- 392
K+FVGGL+ E +++ +R +F +G + +V + D + +GF ++TF +V ++LK
Sbjct: 15 KLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTRNVLKD 74
Query: 393 ---TPKRTIGGKEVDVKRATP 446
I GKEV+VKRA P
Sbjct: 75 KVENGAHRIDGKEVEVKRAIP 95
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 74.1 bits (174), Expect = 1e-13
Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 185
TT+ E++++F +GEI+ VK DPNT RSRGF F+ FK E V++ H I +
Sbjct: 126 TTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLST-SHRIQGRLC 184
Query: 186 D-----PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 350
+ PK+ K+FVG L ++ + +F++FG + +V +P + F F
Sbjct: 185 EVRLPRPKEELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIP-----KPFRHFGF 239
Query: 351 ITFES 365
+TF S
Sbjct: 240 VTFAS 244
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/78 (28%), Positives = 41/78 (52%)
Frame = +3
Query: 213 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 392
G + V GL ++ E++ +F+ FG I E+ D + +GF F+ F+ ++ ++L
Sbjct: 115 GDLIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLS 174
Query: 393 TPKRTIGGKEVDVKRATP 446
T R I G+ +V+ P
Sbjct: 175 TSHR-IQGRLCEVRLPRP 191
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 72.5 bits (170), Expect = 3e-13
Identities = 40/142 (28%), Positives = 75/142 (52%), Gaps = 2/142 (1%)
Frame = +3
Query: 6 TTDKELRDHFGAYGE-IESIN-VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 179
T + + ++F GE +E + ++T +G+S+GFAF+ + E+++ V+ +H I+N
Sbjct: 53 TVESTIFEYFSTLGEQVEHVKCIRT--LSGKSKGFAFVRLRKKEAVESVLGRDDHVIDNS 110
Query: 180 KVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 359
V +K + K+ + + S I + +I FS G I V +P + +RKG C +TF
Sbjct: 111 DVSMEKQDT-YRKVILKNIPSSIGESQILEHFSSSGEIASVYIPENLKTKERKGHCIVTF 169
Query: 360 ESEQVVNDLLKTPKRTIGGKEV 425
S +++K K I G ++
Sbjct: 170 ASVTEAFEVVKKRKHHIHGYDI 191
Score = 33.5 bits (73), Expect = 0.19
Identities = 18/73 (24%), Positives = 30/73 (41%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 398
IFVG L + I +FS G +E + KGF F+ ++ V +L
Sbjct: 44 IFVGSLHPSTVESTIFEYFSTLGEQVEHVKCIRTLSGKSKGFAFVRLRKKEAVESVLGRD 103
Query: 399 KRTIGGKEVDVKR 437
I +V +++
Sbjct: 104 DHVIDNSDVSMEK 116
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 62.1 bits (144), Expect = 5e-10
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Frame = +3
Query: 9 TDKE-LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 185
TD+E L+D+F +GE+ES+ + G SR + F++FK + K + H IN K V
Sbjct: 91 TDEEGLKDYFEQFGEVESVRIMR-TFLGYSRNYGFVLFK-DDGPSKEVLKKSHVINGKTV 148
Query: 186 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 305
D K++ I+VGGL S ++ +R F +FG I V+
Sbjct: 149 DVGKSR-NFRVIYVGGLPSHFTEQTVREHFKKFGVIEAVK 187
Score = 60.9 bits (141), Expect = 1e-09
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 6/167 (3%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+TT ELR++F GE+ I++ N+ + A + F+ + I KV+ HTI K
Sbjct: 246 DTTVDELREYFEKCGELTGIDLLI--NSEKRTCAAIVFFRNLKDIKKVVEE-NHTIKGLK 302
Query: 183 V------DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 344
V + +K R +FV LS + + ++ +F +G + +V + D+ + KG
Sbjct: 303 VRTVQLPNEEKQGVRERTLFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGKSKGC 362
Query: 345 CFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPTLLATATHDTLPL 485
+ VN +L+ P IG +V ++R + T D L L
Sbjct: 363 GVVKLRHPGTVNKILEEPVHVIGKSQVRLRRRGLKIRPTRNTDDLSL 409
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/90 (25%), Positives = 45/90 (50%)
Frame = +3
Query: 171 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 350
N+ PK + +FVGGL+S ++ ++++F +FG + V + + + F
Sbjct: 66 NSTLPSPKDIEKNSRSVFVGGLASGTDEEGLKDYFEQFGEVESVRI-MRTFLGYSRNYGF 124
Query: 351 ITFESEQVVNDLLKTPKRTIGGKEVDVKRA 440
+ F+ + ++LK I GK VDV ++
Sbjct: 125 VLFKDDGPSKEVLK-KSHVINGKTVDVGKS 153
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 62.1 bits (144), Expect = 5e-10
Identities = 43/180 (23%), Positives = 88/180 (48%), Gaps = 20/180 (11%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES-------IDKVMAAGE 161
E ++ +R F +G I I++ DP + +GFAF+ + PE+ ++ V+ G
Sbjct: 112 ELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQMNGVLLGGR 171
Query: 162 HT-----INNKKVDP-----KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 311
+ N + P ++ ++ +I++ + ++ +D+I++ F FG ++ +
Sbjct: 172 NIKVGRPSNVPQAAPLIEQFEQEAKKYARIYIASVHPDLLEDDIKSVFEAFGKVVHCSLS 231
Query: 312 FDKTKNQRKGFCFITFESEQVVNDLLKTPKR-TIGGKEVDVKRA--TPTLLATATHDTLP 482
+ + KG+ FI +E++Q ND + + +GG+ + V RA PT A A +T P
Sbjct: 232 KEPMTGKHKGYGFIEYENQQSANDAIASMNLFDLGGQFLRVGRAITPPTSSAMAAINTTP 291
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +3
Query: 192 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 371
++A A +++VG ++ E+ ++ IR F FG I ++++ +D + KGF F+ ++ +
Sbjct: 95 QRALALMCRVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPE 154
Query: 372 VVNDLLKTPKRT-IGGKEVDVKR 437
L+ +GG+ + V R
Sbjct: 155 AAQLALEQMNGVLLGGRNIKVGR 177
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 54.0 bits (124), Expect = 1e-07
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 7/136 (5%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 185
TTD +L YG I S D +T +G+ F+ F++P S K +AA + NK +
Sbjct: 111 TTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVAA----LVNKGI 166
Query: 186 DPKKAKARH---GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT 356
+ AK + +++ L + + N FS++G ++ + DK N KG F
Sbjct: 167 QAQMAKQQEQDPTNLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNS-KGVGFAR 225
Query: 357 FES----EQVVNDLLK 392
ES EQV+ D K
Sbjct: 226 MESAEKCEQVIKDFNK 241
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +3
Query: 186 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 365
D + K +++ GL + +DD++ ++GTI+ + DK N KG+ F+ FES
Sbjct: 91 DTGEEKLSKTNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFES 150
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 54.0 bits (124), Expect = 1e-07
Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 12/158 (7%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNK-- 179
+ ++++ FG G + S + D TG+S G+AF+ + P+ +K V + NK
Sbjct: 39 SQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTL 98
Query: 180 KVD---PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 350
KV P + ++ +++ GL ++ ++E+ F FG I+ ++ D + +G F
Sbjct: 99 KVSFARPSSTEIKNANLYISGLPKDMKEEEVEALFKPFGKIITSKVLKD-VSGEGRGTGF 157
Query: 351 ITF----ESEQVVNDLLKTPKRTIGGKEV--DVKRATP 446
+ F E++ ++DL +T+ G V VK A P
Sbjct: 158 VRFDKRCEAQTAIDDL---NNKTLPGTNVKLTVKFANP 192
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 53.6 bits (123), Expect = 2e-07
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
K+FVGG+ E DD +R FF++FG I E + D+ + KG+ F+T + K
Sbjct: 11 KLFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACKN 70
Query: 396 PKRTIGGKEVDVKRA 440
+ I G++ +V A
Sbjct: 71 KRPMIEGRQANVNLA 85
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 140
E+ D LR F +GEI V D T +S+G+ F+ ++ +
Sbjct: 20 ESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAE 65
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/57 (42%), Positives = 37/57 (64%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 386
+IFV G + E ++ E+R FF E+G + E ++ DK KG+ FITFES++V + L
Sbjct: 9 RIFVKGFNRETTESELRAFFEEYGVVKESKIVRDK-HGVSKGYAFITFESQEVADGL 64
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 140
ETT+ ELR F YG ++ + D + G S+G+AFI F++ E D
Sbjct: 18 ETTESELRAFFEEYGVVKESKIVRDKH-GVSKGYAFITFESQEVAD 62
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 50.8 bits (116), Expect = 1e-06
Identities = 30/135 (22%), Positives = 65/135 (48%), Gaps = 16/135 (11%)
Frame = +3
Query: 15 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA-AGEHTI------- 170
++L + F G++ + + +D N+ RS+G A+I F ++ + +G+ +
Sbjct: 160 RDLEEFFSKVGQVSDVRIISDRNSRRSKGIAYIEFTDKSAVPLAIGLSGQKLLGAPIMVM 219
Query: 171 ------NNKKVDPKKAKARHG--KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK 326
N + ++ K G +++VG L I++ ++ F FGT+ V++ +D
Sbjct: 220 LTQAEKNRLAAEAERLKQPLGPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSET 279
Query: 327 NQRKGFCFITFESEQ 371
N+ KG+ F+ F +
Sbjct: 280 NRSKGYGFVQFREAE 294
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 49.6 bits (113), Expect = 3e-06
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Frame = +3
Query: 108 FIVFKAPESIDKVMAAGEHTIN--NKKVD---PKKAKARHGKIFVGGLSSEISDDEIRNF 272
++V+KA E+ ++ +A+ I+ + +VD KA +F+G L +I ++ +R
Sbjct: 16 YVVYKAAENANQAIASNGEEIDGFHIRVDLASNDKAHDHQRSVFIGNLPFDIEEEPLREL 75
Query: 273 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDV 431
F+ G + V + D+ KGF ++ FES+ V LK G+++ V
Sbjct: 76 FTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALKMNNAEFKGRKIRV 128
Score = 36.3 bits (80), Expect = 0.027
Identities = 16/82 (19%), Positives = 39/82 (47%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 191
++ LR+ F G +ES+ + D TG +GF +++F++ +++ + +K+
Sbjct: 69 EEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALKMNNAEFKGRKIRV 128
Query: 192 KKAKARHGKIFVGGLSSEISDD 257
+K + F+ + D+
Sbjct: 129 FPSKDKPQTEFISHIQVRFRDN 150
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 48.4 bits (110), Expect = 6e-06
Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
Frame = +3
Query: 72 TDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKA----RHGKIFVGGL 236
T P R R + V K+P K ++ + ++ P++ K + K++V L
Sbjct: 1106 TKPRPSR-RSLSKSVSKSPSPARKGKRSSSSSSSRSRSRSPRRRKRSPTPKPTKLYVAHL 1164
Query: 237 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIG 413
+ ++ D ++ FS +G + V++P D+T N +GF ++ + + E+ L I
Sbjct: 1165 TRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDGGQID 1224
Query: 414 GKEVDVKRATP 446
G+E+ V+ P
Sbjct: 1225 GQEIAVQSVLP 1235
Score = 37.9 bits (84), Expect = 0.009
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +3
Query: 21 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 149
+++ F YG ++++++ TD SRGFA++ + PE +K +
Sbjct: 1173 VQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKAL 1215
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 48.4 bits (110), Expect = 6e-06
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 24/144 (16%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVD 188
D+++++ G+I S+ V TDP G+S+GF F+ F+ PE ++ V I +++
Sbjct: 122 DEQMKEICAEAGKIVSLKVMTDPE-GKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLW 180
Query: 189 PKKAKARHGK-----------------------IFVGGLSSEISDDEIRNFFSEFGTILE 299
+AK R + +++ L I D+ +R FS +GTI
Sbjct: 181 AGRAKKRAERAAEVKAEIEKKRQERINRFQGVNLYIKNLDDPIDDERLREEFSPYGTISS 240
Query: 300 VEMPFDKTKNQRKGFCFITFESEQ 371
++ D K KGF F+ F S +
Sbjct: 241 AKVMKD-DKGNSKGFGFVCFSSPE 263
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 149
D+ LR+ F YG I S V D + G S+GF F+ F +PE K +
Sbjct: 225 DERLREEFSPYGTISSAKVMKD-DKGNSKGFGFVCFSSPEEATKAV 269
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 21/87 (24%)
Frame = +3
Query: 96 RGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA---------------------KARH 212
+GF F+ F+ P +I+ V+A H ++ K +DPK A A
Sbjct: 142 KGFGFVTFRDPATIESVLAKKPHILDGKTIDPKPAVPRGPGQQAQTGAVMGGPQRGSAND 201
Query: 213 GKIFVGGLSSEISDDEIRNFFSEFGTI 293
GK+F+GGL+ ++++++ +FS +G +
Sbjct: 202 GKVFIGGLAFGTTEEDLKEYFSTYGMV 228
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 312 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATP 446
F++ KGF F+TF + +L + GK +D K A P
Sbjct: 134 FERRARMLKGFGFVTFRDPATIESVLAKKPHILDGKTIDPKPAVP 178
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +3
Query: 222 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE-SEQVVNDLLKTP 398
+VGGL+ E+ + + F FG I +V++P D T ++ +GF F+ FE +E +
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67
Query: 399 KRTIGGKEVDVKRATP 446
+ + G+ + V A P
Sbjct: 68 ESELFGRTIRVNLAKP 83
Score = 32.3 bits (70), Expect = 0.43
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 131
E +K L F +G+I + + D T + RGF F+ F+ E
Sbjct: 15 EVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAE 57
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 46.0 bits (104), Expect = 3e-05
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Frame = +3
Query: 45 GEIESINVKTDPNTGRSRGFAFIVFKAPESID-KVMAAGEHTINNKKVDPKKAKARH--- 212
G + ++++ D T +G+ F+ F E D + + K + KA A +
Sbjct: 37 GPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVMNMIKVYGKPIRVNKASAHNKNL 96
Query: 213 ---GKIFVGGLSSEISDDEIRNFFSEFGTILEV-EMPFDKTKNQRKGFCFITFES 365
+F+G L +E+ + + + FS FG IL+ ++ D KGF FI F S
Sbjct: 97 DVGANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFAS 151
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +3
Query: 189 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 368
P + + I+VGGL ++S+ I F + G ++ V MP D+ +G+ F+ F E
Sbjct: 5 PIAERNQDATIYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGE 64
Query: 369 QVVNDLLKTPKR-TIGGKEVDVKRAT 443
+ + +K + GK + V +A+
Sbjct: 65 EDADYAIKVMNMIKVYGKPIRVNKAS 90
Score = 37.9 bits (84), Expect = 0.009
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEI-ESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTIN 173
E +K L D F A+G I ++ + D +TG S+GFAFI F + ++ D + A G++ N
Sbjct: 110 EVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCN 169
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +3
Query: 75 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 209
D T R RGF F+ F++ S DK H INNKKV+ KKA+ +
Sbjct: 5 DKATQRHRGFGFVTFESENSADKACDTQYHLINNKKVEVKKAQPK 49
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +3
Query: 312 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATP 446
FDK + +GF F+TFESE + T I K+V+VK+A P
Sbjct: 4 FDKATQRHRGFGFVTFESENSADKACDTQYHLINNKKVEVKKAQP 48
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 45.6 bits (103), Expect = 4e-05
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 191
+ EL F G I + DP +G ++GFAF F + + ++NK++ P
Sbjct: 165 EDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAV----KKLDNKEIRP 220
Query: 192 KK-----AKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE---VEMPFDKTKNQRKGFC 347
K + ++FVG + S EI FS+ L+ V + D+ K + +GF
Sbjct: 221 GKRLGVCISVANSRLFVGSIPKTKSKQEILEEFSKVTNGLDDVIVYLSADQ-KGKNRGFA 279
Query: 348 FITFESEQVVN 380
F+ +ES Q +
Sbjct: 280 FLEYESHQAAS 290
Score = 36.7 bits (81), Expect = 0.020
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 392
++F+G + + +DE+ F E G I + + D KGF F TF ++ + +K
Sbjct: 153 QVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVK 211
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 44.8 bits (101), Expect = 8e-05
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +3
Query: 177 KKVDPK--KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 350
KK+ PK + + G I++G + ++EI+ FF +FGT+ + + K + KG+ F
Sbjct: 84 KKIKPKGDEDELSPGVIYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAF 143
Query: 351 ITFESEQV 374
+ F ++V
Sbjct: 144 VEFACDEV 151
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 164
+ E++ F +G + I + + RS+G+AF+ F A + + K+ A H
Sbjct: 111 ENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEF-ACDEVAKIAADTMH 160
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +3
Query: 207 RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVND 383
R K+++G L+ + EI F EFG + +V++ DK + +GF F+ +S +Q+
Sbjct: 7 RGRKLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIAPA 65
Query: 384 LLKTPKRTIGGKEVDVKRA 440
+ K + ++GG+ + V A
Sbjct: 66 IEKMNQSSVGGRNITVALA 84
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 18 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 137
E+ F +G +E +++ D +GRSRGF F++ ++ + I
Sbjct: 24 EIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQI 62
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/59 (32%), Positives = 37/59 (62%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 392
+IF G L SE++D+ + F+++ + L+ ++ DK N+ KG+ F++F+ ND +K
Sbjct: 218 RIFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDP---NDFIK 273
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 149
E TD+ L F Y + D + +S+G+ F+ FK P K M
Sbjct: 227 EVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPNDFIKAM 275
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 43.2 bits (97), Expect = 2e-04
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Frame = +3
Query: 45 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK----AKAR- 209
GEI ++ DP TG ++GFAF F S + + T+N+K + P + K+R
Sbjct: 177 GEIREFRLQMDPATGLNKGFAFCTFTEQTSAYQAIT----TLNDKDIRPGRRLAICKSRS 232
Query: 210 HGKIFVGGLSSEISDDEIRNFFSEFGTILE 299
+ ++FV G+ S +EI FS+ T L+
Sbjct: 233 NSRLFVKGIPKRKSKEEIFQEFSKVTTDLQ 262
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 368
++F+G + + +DE+ + G I E + D KGF F TF +
Sbjct: 154 EVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTEQ 204
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 42.7 bits (96), Expect = 3e-04
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNK 179
+ TD+ R F A + + + +G S GF F+ + E K + TI NK
Sbjct: 57 DMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKLNGFTIGNK 116
Query: 180 --KV---DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 344
KV P + ++V + ++ + E R F +G I+ + DK+ KG
Sbjct: 117 VLKVAFSRPGGDNTKGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGC 176
Query: 345 CFITFESE 368
F+ ++ +
Sbjct: 177 GFVLYDKK 184
Score = 37.9 bits (84), Expect = 0.009
Identities = 17/68 (25%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +3
Query: 195 KAKARHG-KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 371
K++A G ++V + + + + I F + G + +V++ +D + Q KGFCF+T +++
Sbjct: 268 KSQAPPGCTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQE 327
Query: 372 VVNDLLKT 395
+ ++T
Sbjct: 328 EAQNAIQT 335
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 41.9 bits (94), Expect = 5e-04
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 22/152 (14%)
Frame = +3
Query: 60 INVKTDPNTGRSRGFAFIVF-------KAPESIDKVMAAGEHTINN---KKVDPKKAKAR 209
+ V DP +S+GF F+ F KA +D V G+ N +K +P + K
Sbjct: 542 VRVVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNNPTQTKPL 601
Query: 210 ------------HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 353
+ ++VG L ++ D E++ FS++G+ILE ++ D KG+ FI
Sbjct: 602 VWDDVFHQSSQLNTTVYVGNLPPDVKDYELQQMFSQYGSILETKVFAD------KGYAFI 655
Query: 354 TFESEQVVNDLLKTPKRTIGGKEVDVKRATPT 449
E+ L + +R + PT
Sbjct: 656 NARGEKRRQRCLTSSRRHGNNSNTTLHTLAPT 687
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 297 EVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKEV 425
EV + D KN+ KGF F++F E + + TIGGK+V
Sbjct: 541 EVRVVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQV 584
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 41.5 bits (93), Expect = 7e-04
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 371
+FVG + E S+++++ FSE G ++ + FD+ + KG+ F ++ ++
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQE 77
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +3
Query: 255 DEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 371
D ++ FSEFG +L V +P K + KGF FI FES+Q
Sbjct: 102 DWLKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQ 140
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = +3
Query: 21 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 197
L+ F +G++ +++ + G +GFAFI F++ + + V+ KK + ++
Sbjct: 104 LKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHVVQMFNRESKTKKEEKRE 162
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +3
Query: 21 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--DPK 194
L FG YG IE +++ TG+S+GF ++ ++ ES + + AG H I+ K V +PK
Sbjct: 79 LESVFGPYGAIEDLSI-IRTQTGKSKGFGYVTYENAESAQRAL-AGTHIIDGKWVIAEPK 136
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK- 392
KIF+GGL + +++D+++ S FG + + D KG+ F + + + ++
Sbjct: 674 KIFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQG 733
Query: 393 TPKRTIGGKEVDVKRAT 443
+G K++ V+RA+
Sbjct: 734 LNGMQLGDKKLIVQRAS 750
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 110
+ ++++ ++GE+ + N+ D TG S+G+AF
Sbjct: 686 EDQVKELLSSFGELRAFNLVKDSATGLSKGYAF 718
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 38.7 bits (86), Expect = 0.005
Identities = 24/81 (29%), Positives = 36/81 (44%)
Frame = +3
Query: 183 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE 362
VD K + +FV L EI+ + + +FFS G I + M D K R + +I F
Sbjct: 62 VDANKVEEIRRTVFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGKPTR--YAYIEFA 119
Query: 363 SEQVVNDLLKTPKRTIGGKEV 425
Q + L+ GGK +
Sbjct: 120 ETQAIVSALQYSGAIFGGKPI 140
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 38.7 bits (86), Expect = 0.005
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Frame = +3
Query: 36 GAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTIN--NKKVDPKKAKAR 209
GA+G + ++ + N ++ + KA E + V A + +K + K +
Sbjct: 20 GAHGLLGALEISPHENYQQNGNSS--TNKAREISNNVAALPIDLVGEVSKDISKYKVVSN 77
Query: 210 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKG 341
K+FVG + ++ E+++FF FG ++ ++ D+ K + KG
Sbjct: 78 KCKVFVGNIGFKVRARELKDFFGYFGDVVYAQIIMDRVKKRSKG 121
>SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 38.7 bits (86), Expect = 0.005
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Frame = +3
Query: 126 PESI-DKVMAAGEHTIN-NKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 299
PE++ D+++ + ++N + D + K+FVGGL +I +DEI F FG+ L
Sbjct: 313 PENLADQIVPSLASSLNCSPNSDSEHIPRFSRKVFVGGLPPDIDEDEIHASFCRFGS-LT 371
Query: 300 VEMPF---DKTKNQRKGFCFITFESEQVVNDLL 389
V+ P K+ KG+ F+ + E V L+
Sbjct: 372 VDWPHKAESKSYFPPKGYAFLLYLEEISVQKLI 404
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 149
TT ++L+ F YG++ I + D NT SRGFAF+ F + M
Sbjct: 27 TTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAM 74
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/76 (22%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL-K 392
K ++G L ++++ ++++ FS + +++V++ D+ + +GF F+TF S++ + D + +
Sbjct: 231 KCYIGNLDFKVNEADLQDRFSRYD-VVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINE 289
Query: 393 TPKRTIGGKEVDVKRA 440
+ G+ + V +A
Sbjct: 290 LDGQEFDGRSMKVNQA 305
Score = 35.1 bits (77), Expect = 0.061
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 57 SINVKTDPNTGRSRGFAFIVFKAPESIDKVM 149
S+ V TD TGR RGF F+ F + + +DK +
Sbjct: 37 SVKVITDRETGRPRGFGFVTFGSEDEMDKAI 67
Score = 34.7 bits (76), Expect = 0.081
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV---MAAGEHTIN 173
+ + +L+D F Y ++ + V +D T R RGFAF+ F + ++++ + E
Sbjct: 240 KVNEADLQDRFSRY-DVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINELDGQEFDGR 298
Query: 174 NKKVDPKKAKARHGKIFVGGLSS 242
+ KV+ +++ + G GG S
Sbjct: 299 SMKVNQARSREQRGGGRGGGYRS 321
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 291 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL-KTPKRTIGGKEVDVKRATP 446
+L V++ D+ + +GF F+TF SE ++ + K + G+ + V +A P
Sbjct: 35 LLSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKAQP 87
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 54 ESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 149
E++N+ TD TGR RGF F+ F + E ++K +
Sbjct: 123 EAVNIITDRETGRPRGFGFVTFGSKEEMEKAI 154
>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 37.5 bits (83), Expect = 0.011
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 45 GEIESINVKTDPNTGRSRGFAFIVFKAPESI 137
G +E++ + TD NTG+ R F F+ F +P S+
Sbjct: 481 GPLENVRIPTDKNTGQQRSFGFVEFSSPVSV 511
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 31.5 bits (68), Expect(2) = 0.012
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEV 302
K+FVG +S ++++R FS FGTI E+
Sbjct: 215 KLFVGMISKHAKEEDLRVMFSPFGTIEEL 243
Score = 25.0 bits (52), Expect(2) = 0.012
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSR 98
+K+LR F YG+I + + D TG+ +
Sbjct: 183 EKDLRPIFEPYGQIYELTILKDKYTGQHK 211
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 36.7 bits (81), Expect = 0.020
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 371
+FV L+ +D+++ FS FGTIL E+ D+ + + FI FE ++
Sbjct: 122 LFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDE 172
Score = 35.5 bits (78), Expect = 0.046
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 143
TTD++L F +G I S V D TG S +AFI F+ E ++
Sbjct: 131 TTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCER 176
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 36.7 bits (81), Expect = 0.020
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Frame = +3
Query: 171 NNKKVDPKKAKARHG-KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC 347
+N K + + G +F+ LS + + I N F +FG I ++ D KG
Sbjct: 401 DNHSQRSKPSDVKEGLTVFIRNLSFDSTQKNITNLFKQFGDIAYCKVVVDHLTQHSKGSA 460
Query: 348 FITFESEQVVNDLLKTPKRTIGGKEVDVKRATPTLLAT 461
F+ + S + V L G +D R L T
Sbjct: 461 FVKYRSAESVTQCLAATDEDSEGLFLDGNRLQVDLAVT 498
Score = 35.9 bits (79), Expect = 0.035
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 155
++T K + + F +G+I V D T S+G AF+ +++ ES+ + +AA
Sbjct: 426 DSTQKNITNLFKQFGDIAYCKVVVDHLTQHSKGSAFVKYRSAESVTQCLAA 476
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 36.3 bits (80), Expect = 0.027
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE----QVVNDL 386
+FVG L E ++ + + S +G I + + + KG+ F+ + + Q L
Sbjct: 115 LFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQAKQQL 174
Query: 387 LKTPKRTIGGKEVDVKRATPTLLATA 464
L T + IGG+ + V A LL A
Sbjct: 175 LNTASKYIGGRILRVAFAESNLLTYA 200
Score = 34.7 bits (76), Expect = 0.081
Identities = 21/91 (23%), Positives = 41/91 (45%)
Frame = +3
Query: 21 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 200
+++ F G + V +P G SRGFAF+ + E +K G+ N ++V+
Sbjct: 222 IKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEK----GQRAHNGRQVEGSNI 277
Query: 201 KARHGKIFVGGLSSEISDDEIRNFFSEFGTI 293
+ +G G + I ++ N + + T+
Sbjct: 278 RVAYGS--PGRTGASILGSQLDNTQAGYTTV 306
Score = 31.9 bits (69), Expect = 0.57
Identities = 31/162 (19%), Positives = 66/162 (40%), Gaps = 14/162 (8%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----KAPESIDKVMAAGEHTI 170
E T+ + D YG IE + + TG S+G+ F+ + A ++ +++ I
Sbjct: 123 EFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQAKQQLLNTASKYI 182
Query: 171 NNKKVDPKKAKAR-------HGK-IFVGGLSSEISDDE-IRNFFSEFGTILEVEMPFDKT 323
+ + A++ H + +FV L + + I+ FS+ G + ++ +
Sbjct: 183 GGRILRVAFAESNLLTYADVHSRTLFVDRLPRDFKNGGLIKELFSQTGNVTFAQVAINPA 242
Query: 324 KNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKEVDVKRATP 446
+GF F+ + +E+ R + G + V +P
Sbjct: 243 NGGSRGFAFVDYATAEEAEKGQRAHNGRQVEGSNIRVAYGSP 284
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
++FVG + ++ +DE+ F G I EV + D Q +G+ F+ + S+ +KT
Sbjct: 75 EVFVGKIPRDLYEDELVPVFETAGPIYEVRLMMD-FNGQNRGYAFVVYTSKDDAKRCVKT 133
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 155
T+ +L F YG++ + + D T SRG AFI+F +S +AA
Sbjct: 22 TNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAA 70
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 35.1 bits (77), Expect = 0.061
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI---VFKAPESIDKVMAAGEHTIN 173
E + ++ + F YGEI++++V D TG +G+A + FK +S + + E
Sbjct: 303 EAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEMLGQ 362
Query: 174 NKKVD 188
N VD
Sbjct: 363 NISVD 367
Score = 34.7 bits (76), Expect = 0.081
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 365
+FV + E +D+I FS++G I + + D+ KG+ + +E+
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYET 343
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 34.7 bits (76), Expect = 0.081
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEV 302
++F+G L S + D ++ FS++GTILE+
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTILEI 386
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 48 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 149
++ + V TD TGR RGF F+ F + E ++K +
Sbjct: 29 DVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAI 62
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/78 (21%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLK 392
+ ++G LS + + + F +++V++ D+ + +GF F+TF S E++ + +
Sbjct: 6 RCYIGNLSYSVDEQALEEKFHGCD-VVDVKVITDRETGRPRGFGFVTFGSKEEMEKAIDE 64
Query: 393 TPKRTIGGKEVDVKRATP 446
+ G+ + V +A P
Sbjct: 65 FDGQDFDGRPMKVNQAQP 82
>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1148
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 380
+F+GGL I++ I F G I + + K +N RK FC + F +++ V+
Sbjct: 353 VFIGGLPESINEHIINEIFYVCGEITSIRISKGKGENARK-FCHLRFGAKESVD 405
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 34.3 bits (75), Expect = 0.11
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Frame = +3
Query: 15 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI---NNKKV 185
++LR F +G + +++K P G+ +AF+ F + K A + N+ K+
Sbjct: 251 QDLRLSFEKFGVVLDVDIKR-PARGQGNTYAFVKFADLDVAAKAKCAMQGQCIGRNHIKI 309
Query: 186 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 305
+++ + +++VGGL IS E+ F FG I ++
Sbjct: 310 GYGRSQ-QTTRLWVGGLGPWISIPELEREFDRFGAIRRID 348
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +3
Query: 186 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 359
DPK + +FVG L + IS ++R F +FG +L+V++ + Q + F+ F
Sbjct: 232 DPKATRT----LFVGNLETGISCQDLRLSFEKFGVVLDVDIK-RPARGQGNTYAFVKF 284
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 33.5 bits (73), Expect = 0.19
Identities = 26/107 (24%), Positives = 45/107 (42%)
Frame = +3
Query: 120 KAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 299
K S + + E T KK P K + +F+G LS + ++ + FF E G L
Sbjct: 152 KEESSSESDSDSDEETPTPKKTVPAKEEM---SVFLGNLSFDADEETLAAFFEEKG--LS 206
Query: 300 VEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 440
+ + +GF + F S++ N L+ G+E+ + A
Sbjct: 207 ATCRVITQEGRSRGFGYADFTSKEDYNKALELNGEDCCGREIRINPA 253
Score = 26.2 bits (55), Expect(2) = 0.57
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 87 GRSRGFAFIVFKAPESIDKVMAA-GEHTINNK-KVDPKKAKARHG 215
GRSRGF + F + E +K + GE + +++P +K G
Sbjct: 216 GRSRGFGYADFTSKEDYNKALELNGEDCCGREIRINPANSKPSRG 260
Score = 24.2 bits (50), Expect(2) = 0.57
Identities = 15/80 (18%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +3
Query: 210 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 389
+ + V LS + + D + + F ++ FD+ + +GF F+ ++ + +L
Sbjct: 288 NSSLIVRNLSYDTTTDSLG---AAFEGCSNAKVIFDRESGESRGFGFVDYDDVETAKKVL 344
Query: 390 -KTPKRTIGGKEVDVKRATP 446
+ + G++V + A+P
Sbjct: 345 SEMAGAEVDGRQVRLDFASP 364
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 255 DEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 359
++IR+ F ++GTI +V + DK + +G C++ F
Sbjct: 37 EDIRSAFEQYGTIEDVWVVKDKATKENRGVCYVKF 71
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +3
Query: 15 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPK 194
+++R F YG IE + V D T +RG ++ F S +A E N DPK
Sbjct: 37 EDIRSAFEQYGTIEDVWVVKDKATKENRGVCYVKFVKASS--AALACEEMDGRNIGDDPK 94
Query: 195 KAK 203
K
Sbjct: 95 PIK 97
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 33.1 bits (72), Expect = 0.25
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 42 YGEIESINVKTDPNTGRSRGFAFIVFKAPES 134
YGEI ++N+ D TG+ +GF F+ ++ S
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRS 32
Score = 31.9 bits (69), Expect = 0.57
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 282 FGTILEVEMPFDKTKNQRKGFCFITFESEQ 371
+G I+ V + DK ++KGFCF+ +E ++
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQR 31
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 33.1 bits (72), Expect = 0.25
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 42 YGEIESINVKTDPNTGRSRGFAFIVFKAPES 134
YGEI ++N+ D TG+ +GF F+ ++ S
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRS 32
Score = 31.9 bits (69), Expect = 0.57
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 282 FGTILEVEMPFDKTKNQRKGFCFITFESEQ 371
+G I+ V + DK ++KGFCF+ +E ++
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQR 31
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 32.3 bits (70), Expect = 0.43
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 119
ET + +L++ F G I I + D T +S+GFAFI F
Sbjct: 191 ETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINF 229
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 32.3 bits (70), Expect = 0.43
Identities = 12/43 (27%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKT-KNQRKGF 344
+++GGLS +++++ + F++FG + +V + D++ K+++ GF
Sbjct: 526 VWIGGLSEDVTENVLLELFNKFGPVKDVVILRDESGKSRQSGF 568
>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
Length = 2269
Score = 31.9 bits (69), Expect = 0.57
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Frame = -1
Query: 481 GSVSCVAVASRVGVARFTSTSFPPIVLLGVLS--KSFTTCSD----SNVMKQKPFLW 329
G+ SC+ + ++ VA S P + L+G LS ++ TTC + +N+ K LW
Sbjct: 1252 GTHSCIPIMAKAFVAPLKKKSIPRLELMGCLSLVRALTTCQEALKFANIEDWKKTLW 1308
>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5445
Score = 31.5 bits (68), Expect = 0.76
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -1
Query: 493 LNLSGSVSCVAVASRVGVARFTSTSFPPIVLLGVLSKSFTTCSDSNVM-KQKPFLWFFVL 317
+N G CV GV + TSFP + +G+L + TT SD KQK F+
Sbjct: 1973 VNAGGKAECVCGTGYYGVPP-SCTSFPVKLNVGILIVNATTMSDIQAFEKQKTFITKLTE 2031
Query: 316 SKGISTSKI 290
G+++ +
Sbjct: 2032 VLGLTSGNV 2040
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 31.1 bits (67), Expect = 1.00
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Frame = +3
Query: 120 KAPESIDKVMAAGEHTINNKKVDPKKAKARHGK-IFVGGLSSEISDDEIRNFFSEFGTIL 296
K P+S A K P K K GK ++V LSS +++ FS++G ++
Sbjct: 317 KTPDSKKTPAKATPAKATPAKATPTKDKKEGGKSLWVANLSSITRAADLKTRFSQYGKVV 376
Query: 297 EVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKEVDVKRA 440
++ + + F +T SE+ + + + G+ + V RA
Sbjct: 377 GAKIVTNSKAPGAQCFGLVTMTTSEEAAKCIQHLHRTELHGRAITVDRA 425
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 31.1 bits (67), Expect = 1.00
Identities = 20/72 (27%), Positives = 37/72 (51%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+ T+++LRDHF +GE+ SI++ N AF+ F + + + AA + + N
Sbjct: 314 KVTEQDLRDHFYQFGELRSISMVPRQNC------AFVCFTSRAAAE---AAADRSFNKLI 364
Query: 183 VDPKKAKARHGK 218
+ ++ K GK
Sbjct: 365 LKGRRLKIMWGK 376
Score = 30.7 bits (66), Expect = 1.3
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEM 308
++VGGL ++++ ++R+ F +FG + + M
Sbjct: 306 LYVGGLEGKVTEQDLRDHFYQFGELRSISM 335
>SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 621
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 3 ETTDKELRDHFGAY--GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINN 176
E++ ++L F I+ + K+ N G++ G AF+VFK+ K + I +
Sbjct: 343 ESSKRDLYKFFNGLKIASIDLLKHKSGKNQGKNTGVAFVVFKSNNDASKALKMDRSYIGH 402
Query: 177 KKVD 188
+ ++
Sbjct: 403 RYIE 406
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKV 185
T+K+L + +G++ ++ K G+A++VFK + D+ +AA + K+
Sbjct: 15 TEKDLENLVKVFGKVREVDFK--------EGYAYVVFKENKDADRAVAALNNSEFHGAKI 66
Query: 186 DPKKAK-ARHGKIFVGGLSS 242
+KAK R+G VGG ++
Sbjct: 67 LMEKAKEMRNG---VGGYTA 83
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +3
Query: 243 EISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 359
+ +D+++R+ F FG I V++ D + KG+ ++ F
Sbjct: 63 DFNDEDLRSKFESFGDIEYVQIVRDHKTRENKGYGYVKF 101
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/56 (23%), Positives = 31/56 (55%)
Frame = +3
Query: 204 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 371
A H + ++G LS + + + F + +++V + D+ + +GF F+T E+++
Sbjct: 80 AEH-RCYIGNLSYSVDEQALEEKFHDCN-VVDVRVITDRETGRPRGFGFVTLEAKK 133
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 51 IESINVKTDPNTGRSRGFAFIVFKAPES 134
+ + V TD TGR RGF F+ +A ++
Sbjct: 107 VVDVRVITDRETGRPRGFGFVTLEAKKT 134
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 28.7 bits (61), Expect = 5.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 450 GLVLHASHRPPFHQLFF 400
G+V ++SH PPFH +F+
Sbjct: 20 GVVRYSSHSPPFHSVFY 36
>SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)
Length = 1276
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -1
Query: 466 VAVASRVGVARFTSTSFPPIVLLGVLSKSFTTCSDSNVMKQKPFLWFFVLSKG 308
V + V ++ T TS+P ++LLG L + S V ++K LW + L G
Sbjct: 165 VKIEQSVENSKNTKTSYPLLLLLGKLLELIPPLSGEIVEREK--LWHYCLQNG 215
>SB_1422| Best HMM Match : Synaphin (HMM E-Value=7.3)
Length = 263
Score = 28.3 bits (60), Expect = 7.0
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 10/116 (8%)
Frame = +3
Query: 111 IVFKAPESIDKVMAAGEHTIN--NKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEF 284
+V K DK +AA H I + ++P K K KI L I ++ I+ ++
Sbjct: 87 VVGKDQAEHDKRLAAVLHRITEIDMTLNPDKCKFSEKKIEY--LGQVIDNEGIKKNPAKV 144
Query: 285 GTILEVEMPFDKTK--------NQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 428
I+++++P D NQ FC E Q + DLLK + GK D
Sbjct: 145 KAIVDMDVPRDIPSLRRFLGMVNQLMKFCPNLAEKTQPLRDLLKKNSAWVWGKAQD 200
>SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
Length = 1198
Score = 27.9 bits (59), Expect = 9.3
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Frame = +3
Query: 111 IVFKAPESIDKVMAAGEHTINN--KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEF 284
+V K DK +AA H I ++P K K KI L I ++ I+ ++
Sbjct: 423 VVGKDQAEHDKRLAAVLHRITEIGMTLNPDKCKFSEKKIEY--LGQVIDNEGIKKNPAKV 480
Query: 285 GTILEVEMPFDKTK--------NQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 428
I+++++P D NQ FC E Q + DLLK + GK D
Sbjct: 481 KAIVDMDVPRDIPSLRRFLGMVNQLMKFCPNLAERTQPLRDLLKKNSALVWGKAQD 536
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +3
Query: 42 YGEIESINVK---TDPNTGRSRGFAFIVFKAPESIDKVM 149
+GEIE PN G RG+ F+ FK E K +
Sbjct: 410 FGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKEDARKAL 448
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 446 WCCTLHIDLLSTNCSFGSLKQIIYNL 369
WC D+L+T CS GS++ ++ L
Sbjct: 3068 WCLDCRGDILATGCSDGSVEVVVARL 3093
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,006,186
Number of Sequences: 59808
Number of extensions: 436884
Number of successful extensions: 1219
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -