Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0130
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0621 - 4511583-4512116,4512307-4512719,4513236-4513482           28   5.8  
06_01_0618 - 4492057-4492590,4492780-4493192,4493714-4494026,449...    28   5.8  

>06_01_0621 - 4511583-4512116,4512307-4512719,4513236-4513482
          Length = 397

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -2

Query: 503 SKISSLVLVHTTLIFIDAFVMPMNCLLPAQPFRKPALSLDELVTSTVYIKKQ 348
           SKI  ++     LI + ++   ++ +L A+  R    SLD+L+ +  Y+  Q
Sbjct: 91  SKIVVVIWCFVVLILVQSYTASLSSMLTAKRLRPSVKSLDQLLLTGDYVGYQ 142


>06_01_0618 -
           4492057-4492590,4492780-4493192,4493714-4494026,
           4495257-4495828,4498324-4498600
          Length = 702

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -2

Query: 503 SKISSLVLVHTTLIFIDAFVMPMNCLLPAQPFRKPALSLDELVTSTVYIKKQ 348
           SKI  ++     LI + ++   ++ +L A+  R    SLD+L+ +  Y+  Q
Sbjct: 396 SKIVVVIWCFVVLILVQSYTASLSSMLTAKRLRPSVKSLDQLLLTGDYVGYQ 447


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,566,888
Number of Sequences: 37544
Number of extensions: 254045
Number of successful extensions: 394
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)