Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0130
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.0  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   8.0  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           21   8.0  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   8.0  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 375 NIYCVYKKTKMCVSGRLTEVIT 310
           NI   Y KT  C+SGR  +V+T
Sbjct: 292 NIVTSYCKT--CISGRAFQVLT 311


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 22  SDNCLWEGRSLRYVTRYGVSLSGFSFSLAY 111
           S+N  W G + + +T  G+S  G S    Y
Sbjct: 190 SENIEWFGGNPKRITLIGLSAGGASVHYHY 219


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 22  SDNCLWEGRSLRYVTRYGVSLSGFSFSLAY 111
           S+N  W G + + +T  G+S  G S    Y
Sbjct: 61  SENIEWFGGNPKRITLIGLSAGGASVHYHY 90


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 22  SDNCLWEGRSLRYVTRYGVSLSGFSFSLAY 111
           S+N  W G + + +T  G+S  G S    Y
Sbjct: 190 SENIEWFGGNPKRITLIGLSAGGASVHYHY 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,934
Number of Sequences: 438
Number of extensions: 3215
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)