Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0129
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    98   1e-21
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    29   0.72 
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    28   1.7  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    25   8.9  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   8.9  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   8.9  

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 1/127 (0%)
 Frame = +2

Query: 53  MSWQDYVDKQLMASRCVTKAAIAGHDGN-VWAKSEGFEISKDEVAKIVAGFENESLLTSG 229
           MSWQ YVD  L+ +  + +AAI    G+ VWA S GF +S  E+  + AGF++   +   
Sbjct: 1   MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQDPPSMFGT 60

Query: 230 GVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGE 409
           G+ +AG +YI +      I  KL K G+ C+ T+  +++S Y E   P +AA + E L +
Sbjct: 61  GIILAGQKYITIRAEGRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALAD 120

Query: 410 YLITCGY 430
           YL+  GY
Sbjct: 121 YLVGVGY 127


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -2

Query: 276 SVPLR*MYRVPAIVTPPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAFVTH 97
           +VPL   Y    + T   + S   SKP+    +S  + + P +  H++PS  ++A   ++
Sbjct: 487 NVPLYPAYNSSPVQTRTSLFSSRLSKPSNPIVSSVSQANAPKNALHSMPSPTSLANLPSN 546

Query: 96  L 94
           L
Sbjct: 547 L 547


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
 Frame = +3

Query: 588 SLVCTCDYFVD--SGPFLYAHR---LLKXXXXXXXXKFVLKFCF 704
           +++C C+YF+D  +GPFL +++   +L         + VLKF +
Sbjct: 322 AIMCRCEYFLDMLAGPFLESNQELPVLSLPFSSSVVEIVLKFLY 365


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 440 KLAVI*EYYKIIFFPRGNK*LHFVYSIK 523
           K+++I E  K+ F P GNK  HF +S+K
Sbjct: 295 KVSLIQEGVKVDF-PEGNKFQHFFHSLK 321


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 749 ISYAKLKMLHYDWSIKAKF*YKFN 678
           ISY +L +LH   ++K +F + FN
Sbjct: 255 ISYLRLSLLHCKEALKTRFDFGFN 278


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 135 MCGQSRKASKFQKMKWRR 188
           MC  S++   FQK KW R
Sbjct: 19  MCNYSKRLDTFQKKKWPR 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,604
Number of Sequences: 5004
Number of extensions: 65919
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)