Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0129
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   4e-09
SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)                   57   2e-08
SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)                  32   0.44 
SB_20951| Best HMM Match : Pentaxin (HMM E-Value=9.1e-17)              30   1.8  
SB_5805| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09)                 29   4.1  
SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12)                29   5.5  
SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_23380| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_23075| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
 Frame = +2

Query: 101 VTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTDH 280
           V +AAI G DG+ WA S GF +S+ E  +++   ++ S+      TI G +Y+ L     
Sbjct: 7   VQRAAIHGLDGSCWATSSGFSVSQQEAMELLKSLKDGSV---SAKTIGGAKYMMLRNDQE 63

Query: 281 --IIRAKLGKVGVHCM-KTQQAVVISLYEEPI-QPQQAASVVEKLGEYLITCGY 430
             I   KL   G  C+  T+QA+VI  YEE         +VVE+L +YL   GY
Sbjct: 64  SKICYLKLKDKGGFCVCLTKQALVIGGYEESAGGAGNCNNVVEQLAQYLKESGY 117


>SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)
          Length = 571

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
 Frame = +2

Query: 71  VDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTS-GGVTIAG 247
           VD+ L+ +  V KA+I G +G  +A S GF +   E   ++A    +   T   GV +  
Sbjct: 450 VDESLLGTSQVAKASIHGLNGERYASSSGFVVLPSEAQVLIAAITKDPSPTYYKGVCLNR 509

Query: 248 TRYIYLS-GTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITC 424
           T+Y  +     H +  + G  G   + T Q ++I  Y E + P   ++V EKL +Y    
Sbjct: 510 TKYFVIRVDPGHSLYCRKGNEGAVAVLTSQCLLIGAYSEGMTPGCCSAVTEKLADYFRVN 569

Query: 425 GY 430
           G+
Sbjct: 570 GF 571


>SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 383

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
 Frame = +2

Query: 53  MSWQDYVDKQLMASRCVT------KAAIAGHDGNV-WAKSE---GFEISKDEVAKIVAGF 202
           MSW  Y+D  L  ++  T      KA I G DG   W  +      ++  +E  KI   F
Sbjct: 112 MSWDSYIDNLLAQAKDATGNCHADKACIIGLDGGAPWTSAGHACAVKLQPEECTKIANCF 171

Query: 203 ENESLLT--SGGVTIAGTRYIYLSGTDH--IIRAKLGKVGVHCMKTQQAVVISLYEEPIQ 370
           +N+   +  S G+   G +Y +L   D   ++  K     +    ++ A+VI   +E  Q
Sbjct: 172 KNKDFTSFMSSGIHAEGEKYQFLREEDGKLVLGKKKDHGAITIQASKTALVIGHTKEGGQ 231

Query: 371 PQQAASVVEKLGEYLITCG 427
                  V  + EYL + G
Sbjct: 232 QGNTNKAVAVIAEYLESLG 250


>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
          Length = 404

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 16/76 (21%), Positives = 32/76 (42%)
 Frame = +2

Query: 179 VAKIVAGFENESLLTSGGVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYE 358
           ++ +V  F + +     G+      Y  +      +  K  K G+  +KT   ++++LY 
Sbjct: 1   MSSLVGAFGDSARTRMEGLKFEDVLYECVRADKFSVYGKHDKTGIVAIKTATLILVALYS 60

Query: 359 EPIQPQQAASVVEKLG 406
           + + P       EKLG
Sbjct: 61  QEMSPSICVEASEKLG 76


>SB_20951| Best HMM Match : Pentaxin (HMM E-Value=9.1e-17)
          Length = 179

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
 Frame = +2

Query: 65  DYVDKQLMASRCVTKAAIAGHDGN------VWAKSEG-FEISKD-EVAKIVAGFENESLL 220
           DY D  +  ++  T+  IA +DG        W  + G + + KD  VAK   G      +
Sbjct: 37  DYRDVVIYIAQNTTRTGIAVNDGQWHHLCVTWENTAGSWRLYKDGRVAKSGTGLSQGEQI 96

Query: 221 TSGGVTIAGTRYIYLSGTDHIIRAKLGKV 307
             GG  + G     L G  H  ++ +G++
Sbjct: 97  DGGGAVVLGNEQDMLGGGFHQTQSFIGEM 125


>SB_5805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 340 HSLLCLHAMHADLAKLRADDMVCATEVDVPRARYRHAAT 224
           HSL C    +A LA +R   ++CAT    P A  RH+ T
Sbjct: 71  HSLECTIRCNAPLAVMR-HSLLCATRCHAPLAVMRHSRT 108



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 340 HSLLCLHAMHADLAKLRADDMVCATEVDVPRARYRHA 230
           HSLLC    +A LA +R   ++CA     P A  RH+
Sbjct: 37  HSLLCATRCYAPLAVMR-HSLLCAIRCYAPLAVMRHS 72


>SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09)
          Length = 355

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 74  DKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGT 250
           D  LMA   +   A+A   G+ W+   G  I K    +++       + T+GGVTI GT
Sbjct: 174 DASLMAMAVL--GALACSCGDTWSSEIGTAI-KSHTPRLITTLRKVPVGTNGGVTIPGT 229


>SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12)
          Length = 697

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 125 HDGNVWAKSEGF-EISKDEVAKIV-AGFENESLLTSGGVTIAGTRYIYLSG 271
           H G  W  ++G  EI  D + ++   GF     L +GG  + G  Y  L+G
Sbjct: 380 HYGITWRSNDGHVEIHADGILRLSQTGFATGHTLPAGGTMVLGQSYRVLNG 430


>SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 994

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = +1

Query: 334 SCGHFSL*RTHPTSAGR----ICRGEVRRIFNYLWLLEVEARRDLRVL*DNIFSTGK*VT 501
           +C  F + R HP  A +    + R   RR+  +L L+E+E  +DLR+  D+  +  K + 
Sbjct: 205 TCFRFRM-RYHPREAAQRQKELQRSVRRRLNCFLELMEMELSKDLRLEVDHSDAIVKFLD 263

Query: 502 AFCIFYKVIRGPFI 543
           A C  +  ++  F+
Sbjct: 264 ADCCMFTKLKTRFL 277


>SB_23380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 544

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -3

Query: 761 CLFEISYAKLKMLHYDWSIKAKF*YKFNSLCSNNYFEETVSV*KGSRIHKIITCAH 594
           CL+ + Y+   ++    SI+AK    F  +    +  +   V     IHKI+ C H
Sbjct: 333 CLYVVKYSGTILIELIDSIQAKL---FGMIVEKCFVPDLQKVYHAPNIHKIVDCTH 385


>SB_23075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +2

Query: 65  DYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTI 241
           D++ +Q+  S C+   A+A   G    K   F +  D   ++V   + ++L TS  + I
Sbjct: 249 DFIMRQIETSNCLRILALAERHGLKILKEAAFSVIMDNFTEVVETDDFKNLSTSQVIDI 307


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,968,305
Number of Sequences: 59808
Number of extensions: 510413
Number of successful extensions: 1165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)