Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0127
         (712 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    23   3.2  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    22   4.3  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   4.3  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   5.7  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   5.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.5  

>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 437 DLSIIHKSSLTIDTV 393
           DLS +HK++LTI+ +
Sbjct: 100 DLSSVHKTTLTIENL 114


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 288 PRTPYENRMYSLKIECGTRYPDEPP 362
           P+   EN  Y   ++CG R   EPP
Sbjct: 65  PKFLTENCDYIHNVDCGDRTQLEPP 89


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 288 PRTPYENRMYSLKIECGTRYPDEPP 362
           P+   EN  Y   ++CG R   EPP
Sbjct: 65  PKFLTENCDYIHNVDCGDRTQLEPP 89


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 658 LVHVLQINYCLYNLNIGL 711
           L+H+LQ   C+++L  GL
Sbjct: 273 LIHLLQEYRCIFSLRPGL 290


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 282 GPPRTPYENRMYSLKIE 332
           GPPRTP + ++ + K++
Sbjct: 59  GPPRTPLQPKLVAGKLK 75


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 421 WIIDKSQFLLDGSVTIPSKQFF 486
           W++D S  L  G++T+   +FF
Sbjct: 631 WVMDWSDMLSVGNMTLILDKFF 652


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,048
Number of Sequences: 336
Number of extensions: 3770
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)